Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00522 ATGAGTCTTGGAGAGCATATTGCTTATGACACAATTATGATATTTCTATCAATATCTTTGATTATTCTTGGTGTAATACTCTATTTGGCTTGCAAGAAGAAACCTGTTGAATCAGAAGAAACACTTTCAGTGAAACACAGTGCTCATGCATACCCTTTAACAGAAATTGATGTTGCTACAAATGGCTTCAACCATAGAAGAATCATTGGAAAGGGTCGTTTAGGAACAGTTTATGCAGGAAAACTAGAAAATGAAGAGCTTGTAGCTGTCAAACGCATTCACCCGGTTCTTGTATTAAGCAACGCGGGATTTGGATTCTCTTCAGTGATGAAATGGCTCTCTTTAGCTCAACACCCTAACGTCGTTCCCATAATTGGATTCTCAGAAGCGCCAGGTGAAAGAGTTATAGTGATGGAGTTTGTTCGAATGGCAAATTTGGAATTTTACTTGCATGAAAATCATGATGGAGGCTCTTCTTCACTTTTGGATTGGAACAAGAGGTTTATGATTGCAGCTGGAGTAGCTAAAGGGCTACAATATCTACATGAAGTGGTAGCACCAAATATTGTACATGAAAAAAGAGGGTTAATTGGTTATGTTGATGATGAATATTGGAATGAAGGATTAAGGGGTGGTAGTGTTTGCAAGGAAAGTGATATTTATAGTTTAGGAGTTGTTTTGTTGGAGCTTTTAAGTGGAAGAGGATGTGAGGGTGGATTATTGGTGAAATGGGCTTTGCCTTTGATTAAGGATATGAGATATAGTGAAGTTTTGGATCCAAAGTTGATGATTCCTTCTAATATGAAGGCAATTGTTAGATTAGCAAAAGTTGCTTTAGCTTGTGTTGGTAATTCAAGAAAATGTAGGCCCTGTATAAATCATGTGGCTACCATTTTGAATGATTTAGAGACAGAAGTGTGCCTCTTATCAAGTTGA 936 0.3729 MSLGEHIAYDTIMIFLSISLIILGVILYLACKKKPVESEETLSVKHSAHAYPLTEIDVATNGFNHRRIIGKGRLGTVYAGKLENEELVAVKRIHPVLVLSNAGFGFSSVMKWLSLAQHPNVVPIIGFSEAPGERVIVMEFVRMANLEFYLHENHDGGSSSLLDWNKRFMIAAGVAKGLQYLHEVVAPNIVHEKRGLIGYVDDEYWNEGLRGGSVCKESDIYSLGVVLLELLSGRGCEGGLLVKWALPLIKDMRYSEVLDPKLMIPSNMKAIVRLAKVALACVGNSRKCRPCINHVATILNDLETEVCLLSS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00522 311 Gene3D Phosphorylase Kinase; domain 1 27 140 - -
Trre3g00522 311 Pfam Protein tyrosine and serine/threonine kinase 66 184 IPR001245 GO:0004672|GO:0006468
Trre3g00522 311 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Trre3g00522 311 ProSiteProfiles Protein kinase domain profile. 63 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00522 311 Gene3D Transferase(Phosphotransferase) domain 1 143 193 - -
Trre3g00522 311 Gene3D Transferase(Phosphotransferase) domain 1 194 307 - -
Trre3g00522 311 SUPERFAMILY Protein kinase-like (PK-like) 38 298 IPR011009 -
Trre3g00522 311 PANTHER OS01G0253100 PROTEIN 194 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00522 Trre-Chr3 3531883 3533079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00522 40 299 Receptor kinase-like Gene Family AT3G59420 31.457 2.22e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre3g00522 PK_Tyr_Ser-Thr 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00522 - - mtr:11441273 523.857