Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00517 ATGCTTCCTCTTTTCATGTCCCTCTTCCTCCTCCTCCTTCTCCTCCTCCTTCAACCACCAACCATTTCATCTCTCTCCCAAGAAGGTCTCTACCTACACCAATTCAAACTCTCCGTAGACGATCCATCCTCTTCTCTCTCCACTTGGAACAACCGCGACCAAACACCATGCTCTTGGTCCGGCATAACCTGCGACGACAAAACAAACACCACCGTAACAAAAATTAACCTCTCAAATTTCAACCTCTTCGGTCCACTCCCAACCTCAATCCTCTGTCGTTTAACAAATCTCACCACACTAATCCTAACAAACAATTCTATCAACCAAACACTCCCTCTAGATATTTCTCTTTGCACCTCCCTTACTCATTTAGACCTCTCTCAAAATCTACTCACCGGTACACTCCCCCACACTCTATCAAATCTCGTTAACCTCCGTTATCTTGACTTAACGGCTAACAACTTCTCCGGTTCAATTCCTAACTCCTTCGGAACATTCCAGAAACTCGAAGTCATTTCTTTAGTTTATAATCTTCTAGAATCTTCTATTCCTCCTTCTCTCGGAAACATAACTACTTTGAAAACTCTTAATCTCTCTTATAATCCTTTTCAACCGTCGCATATTCCGCCGGAGATCGGAAACCTAACTAACCTTGAGATTCTATGGCTTAGTTCATGTAATCTTATCGGAGTTATTCCTGATTCGTTTAGGAATTTGAAGAAACTAAGTGTATTTGATCTTTCTATGAATAATCTTGAAGGTTCTATTCCGAGTTCGCTCACTGAAATGACGAGTTTGAAGCAGATTGAGCTTTATAATAACTCGTTTTCCGGTGAGTTACCTGCTGGAATGTCGAATCTTACTTCGCTGAGGCTTATTGATGTTTCTATGAATTTTATCGGTGGTGTTATACCTGATGAGTTGTGTAGATTACCGCTTGAGAGTCTTAATCTTTATGAGAATAGGTTCTCCGGTGAGGTTCCGGCGAGTATAGCTGACTCGCCGAACTTATATGAGTTTAAGATTTTTACAAATTTGCTCTCCGGTGAGTTGCCGGAGAATTTAGGGAAGAATGGACCGTTGATATGGTTTGATGTTTCAAATAATAAATTCTCCGGTAAGATTCCGGCGAGTTTGTGTGAGAAGGGAGCGTTGGAGGAGTTATTGATGATACATAATTCATTCTCCGGGGAGATTCCGGAGAGTTTGGGTAGGTGTCGGACATTGGCGCGTGTTAGGTTGGGTTTTAATAGGTTGTCCGGTGAAGTTCCGGTGGGTTTTTGGGGTCTGCCGCATGTGTATCTTCTTGAACTTGTTGATAACTCGTTTTCTGGTTCAATTGCTAAGACTATTGGTGGAGCTGGGAATTTGTCTTTGTTGACTTTATCGAATAATAATTTCTCTGGTGTGATTCCTGAAGAGATTGGAAGGTTGGAAAATCTTTTGGAGTTTTCTGGTGGTAATAACAAGTTCAACTCTTCTTTGCCTGAGAGTATTGTGAATCTCTCCCAACTTGGGATTCTTGATCTTCACAATAATAATCTCTCTGGGGAGCTTCCAAAAGGGATTCAATCTCTCAAGAAACTCAATGAGTTAAATTTGGCTAATAATGCGATTGGTGGGAAAATTCCTGAAGAAATTGGGAGTATGTCTGTGCTAAACTTTCTCGATCTTTCTGATAATCAATTTTCTGGAAATGTTCCTTTGAGTTTGCAGAATTTGAAGCTCAATCAGCTAAATTTGTCTTACAATAGTCTTTCTGGAGAGATTCCACCTCTTATGGCTAAGGATATGTATAGGGATAGTTTTATTGGTAATCCTGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGTCAAAGGGGAGGGTAAGAATACAAATTTTGTTTGGTTGCTTAGAACTATTTTCATAGTTGCAGCTTTGGTTTTTGTCTTTGGTGTGATTTGGTTCTACTTCAAGTACATGAATATCAAGAAAGGTAGATCTATTGATAAAGCGAAATGGACATTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGACGAGATCTTGAATTGCCTTGATGAAGATAATGTTATAGGAAGTGGATCGTCCGGGAAAGTCTACAAGGTTGTGCTTAGAAATGGGGAGGCTGTTGCCGTGAAGAAGATATGGGGCGGGGTCAGAGTGGAAACGGAGAGTGGAGATGTTGAAAAGAATCAATTTCAAGACAATGCTTTTGACGCAGAGGTTGAAACTTTGGGAAAGATTAGGCACAAGAACATTGTCAAGCTATGGTGTTGCTGTACCACAAGGGATTGCAAGCTATTGGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGATATGCTTCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTCTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCACGATTGTGTTCCTCCTATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGACGAACACTTTGGCGCAAGGGTTGCAGATTTTGGGGTAGCTAAGGTGGTCGAATCCAATGGGAAAGGAACTAAATCCATGTCAGTCATTGCTGGCTCTTGTGGGTATATTGCACCAGAATATGCATACACACTTAGAGTGAATGAGAAGAGTGACATATATAGTTTTGGTGTTGTTATCCTCGAGTTAGTCACTGGAAGGAAGCCAGTAGATCCTGAATTCGGGGAAAAAGATTTGGTTATGTGGGCATGTAACACGTTGGATCAGAAAGGTGTTGACCATGTGCTTGACTCACGACTCGATTCTTGTTTCAAGGAAGAAATTTGCAAGGTCCTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACTAGAGGTAGGAGGCACGGAGAGCCAAACCAAGTCTTCCCAGAAAGCTGGAAAGTTGTCCCCTTATTACTATGATGATGCATCAGATCATGGAAGTGTTACTTAA 3006 0.4118 MLPLFMSLFLLLLLLLLQPPTISSLSQEGLYLHQFKLSVDDPSSSLSTWNNRDQTPCSWSGITCDDKTNTTVTKINLSNFNLFGPLPTSILCRLTNLTTLILTNNSINQTLPLDISLCTSLTHLDLSQNLLTGTLPHTLSNLVNLRYLDLTANNFSGSIPNSFGTFQKLEVISLVYNLLESSIPPSLGNITTLKTLNLSYNPFQPSHIPPEIGNLTNLEILWLSSCNLIGVIPDSFRNLKKLSVFDLSMNNLEGSIPSSLTEMTSLKQIELYNNSFSGELPAGMSNLTSLRLIDVSMNFIGGVIPDELCRLPLESLNLYENRFSGEVPASIADSPNLYEFKIFTNLLSGELPENLGKNGPLIWFDVSNNKFSGKIPASLCEKGALEELLMIHNSFSGEIPESLGRCRTLARVRLGFNRLSGEVPVGFWGLPHVYLLELVDNSFSGSIAKTIGGAGNLSLLTLSNNNFSGVIPEEIGRLENLLEFSGGNNKFNSSLPESIVNLSQLGILDLHNNNLSGELPKGIQSLKKLNELNLANNAIGGKIPEEIGSMSVLNFLDLSDNQFSGNVPLSLQNLKLNQLNLSYNSLSGEIPPLMAKDMYRDSFIGNPGLCGDLKGLCDVKGEGKNTNFVWLLRTIFIVAALVFVFGVIWFYFKYMNIKKGRSIDKAKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLRNGEAVAVKKIWGGVRVETESGDVEKNQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDMLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDEHFGARVADFGVAKVVESNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRKPVDPEFGEKDLVMWACNTLDQKGVDHVLDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLLEVGGTESQTKSSQKAGKLSPYYYDDASDHGSVT 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00517 1001 Gene3D Ribonuclease Inhibitor 383 622 IPR032675 -
Trre3g00517 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Trre3g00517 1001 FunFam Receptor-like protein kinase HSL1 671 774 - -
Trre3g00517 1001 Pfam Protein kinase domain 689 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00517 1001 Gene3D Phosphorylase Kinase; domain 1 671 774 - -
Trre3g00517 1001 SMART LRR_typ_2 119 141 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 287 311 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 502 525 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 190 214 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 94 118 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 526 550 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 239 263 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 142 165 IPR003591 -
Trre3g00517 1001 SMART LRR_typ_2 215 238 IPR003591 -
Trre3g00517 1001 SUPERFAMILY Protein kinase-like (PK-like) 683 967 IPR011009 -
Trre3g00517 1001 FunFam Receptor-like protein kinase HSL1 312 619 - -
Trre3g00517 1001 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Trre3g00517 1001 SMART serkin_6 687 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00517 1001 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 984 - -
Trre3g00517 1001 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Trre3g00517 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 280 - -
Trre3g00517 1001 Gene3D Ribonuclease Inhibitor 142 209 IPR032675 -
Trre3g00517 1001 MobiDBLite consensus disorder prediction 975 1001 - -
Trre3g00517 1001 ProSiteProfiles Protein kinase domain profile. 687 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00517 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 25 187 - -
Trre3g00517 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 385 968 - -
Trre3g00517 1001 Gene3D Transferase(Phosphotransferase) domain 1 775 992 - -
Trre3g00517 1001 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Trre3g00517 1001 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Trre3g00517 1001 SUPERFAMILY L domain-like 362 609 - -
Trre3g00517 1001 SUPERFAMILY RNI-like 74 424 - -
Trre3g00517 1001 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Trre3g00517 1001 Gene3D Ribonuclease Inhibitor 210 381 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00517 Trre-Chr3 3474084 3477457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00517 20 1001 Receptor kinase-like Gene Family AT1G28440 67.915 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g00517 Pkinase 8.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00517 - - gmx:100776936 1512.28