Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00514 ATGGATGCTGAAGAAGCTGAGAACAATACCCAGAAGGGTGATGATGGGGGTGAAAATAGCAATGAGTATAACAATAACAACAATAACAATGGAAGTAATAGCAAAATTATGAGTTCGAGTGAAGGTCAGAGCAAACCCAAGCGTCAGATGAAAACCCCTTTTCAGCTTGAAATGTTAGAGAAAGCTTATGCTTTGGAAACTTACCCTTCGGAGAGTACGAGGTTAGAGCTGTCGGAGAAGTTGGGGTTGTCGGATCGACAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCAATTAAGAAGCCAAAAAAGGTGCCACCTTTGCCAGATTCTCCTACTGATGAACCTAACCCCAAGTTGGTTATTGAGACCTTAAATGAATATGGATCCGGGTCGGGTTCCGGGTCTAGTCCGTTTGCTCGACCAGAGTTGAGGAATGTCGTGCCCCCTCGGACTTACTATGAGTCGCCACAGACTATAATGGAACTTAGAGCAATTGCTTGTGTGGAAGCACAGTTAGGAGAGCCTTTAAGAGAAGATGGACCTATTTTAGGAATTGAGTTTGATCCATTGCCACCTGATGCATTTGGGGCACCCTTAGCTGTTGCAGAACAGCAGAAGCGGCCTAGTCTTGCCTACGATAGTAAAATATATGAAAGACATGAAGTTAGAACGAATAAGGCAATGACAAGGACACTCCCTGAATATACATTTGTTCCGAACCAGTCCAGCATTAGATCTGATAAGTTTGGACAATTGAGCCAGCCTCATTTATATGATCCAATGGAGGGTCCTACTAGAACTCCTCCTTTTCCGATTGGAAATGAGCATCTACCTAGAACTCATGCTACTCAAAGCCATTCTTCCCGTGCTCGCCTTTCATCTCAACAGGACAAGCACATGACTCCCTATGCTTCCCCTCCCCCGCTTTTGTCTCAACACGACAAAAAAGTGATTCCCTATCCATCTCCTCCTCGAGACAATGATGTTGTCCCCAAAAGGGAACCTCACATAAACATAGCCAATGTTGGTATGAACTCCCAATTCCCTGATCACCAAATTGTTGGGCAAGAAAATTCTATAGCTTTACCTGGTGGACAAGTTATCCATAATGATGCAGTGCTGCGGGTGGAGAAGAAACGAAAGAGTGACGATGCCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATAAGGATGAAGAAAGAGCTTGAGAAACAAGATATCCTACGAAGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAAAGACAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATTAAGGCGTGAGCAAAGGCGGGAGTTGGAACGAAGGGAAAAATATTTGATAAAAGAACATTTAAGAGCTGAGAAAAGGAAGCAGAAAGAAGAGATTCGCAAAGAGAAAGAGGCAGAGAGAAGGAAAGCAGCCCTTGAAAAGGCAAATGCTCGTAGAATAGCTAAAGAATCTATGGAGCTCATTGATGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGGCTGCCGTCTATTATCCAAATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCAAAGAGTGTGAAGCTAAAAAAACCATTTGCTATCCAGCCTTGGATCAACTCGGATCAAGATGTTGGCAACCTTCTCATGGTTTGGCGATTCTTAATTACCTTTGCTGATGTTCTGGTGTTATGGCCTTTTACTCTTGATGAATTTGTTCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTAAACCAGAATGGAGCTGCTAATCCTGCTGGTGGCCATCCAGAAATTGTGGAAGGAGCATATACATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCACTATCTGCAGGATTTGGACCAAAGCTGAGAAAAAGAAGTATTACGTGGTCATATGCAAATGATAAAGAAGAGGGAAGAAGTGGTGAAGATGTCATTTCTACACTTCGTAATGGTTCAGCGGCTTTAAGTGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACATAGGTTAACTCCTGGAACCGTTAAATTTGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGATCTTGCAGAAAAGATTCAGAAATCTGGACTCCGGGACTTGACCACAAGCAAGACACCTGAAGCATCGATTTCGGTTGCTTTGACTAGAGATGGCAAACTTTTCGAAAGAATAGCTCCATCAACATATCGTGTACGAACTGCATTTAGAAAGGATCCTGTTGATGCCGAGGCCATTCTTTCGGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGATTTCTAGCTGGTGAAGATGCCGATGATGTGGAAAGAGAAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGACGATGATTTGGTAAATCCTTCAAGTGGAAACCAAAATACAGAACAGTATCATGATATGAATGTTTCCTCCGTAAATGTGAACGAAAGTTCAGGCCATGAAGTAGACCTTATTCAAAATGAGCTTGATACTGATCTGCCTTGTTTTCTTGAGAATGGTTCCACATCTAAGGATGTTGATCTTCCCAGTTCTGTCACGGTACAACCCGTTGCCTTTGAAAATCTAAATACTGGAAATCTTGACGATGAAAATATGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTTACCGAAGGGGAATATTCCGATCTTAGTGTAGAAGAGCGTCTAAATGCACTTGTTGCACTGGTTGGGGTAGCAAATGAAGGAAATTCAGTTCGTATTGTTCTTGAGGATCGATTGGAAGCAGCAAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAGTTCGTCTAAAAGATGATTATATTAGTAAATTAGATTTCCAACCACTTGCCGGAAATAAAATTGAAACACAAGAAGGAAACCAAAGCCCATTGCTCGACATCAATATTAACAACATTAAGAATGAACCTTCACCGAGCACTGCAGAAAACCAAAAAGGAGCTTCTTCTGCACAGAGCCTACTTATTGAAAAGCCATCAACAATTCAAGATTTCGGCGCAGGCACAGGTCCAGAGACCTTTCAGAGTCAGGTAGCTGCCCAATATTCAAAAAGATCGCGATCACAGTTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGGCAAGACCGCAGGCGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTAGTAATGATCCCGGTTCTGGCAGGATCTTTGTTGAACATCATGATGGCAGTTGGAGACTAATTGATTCTGAAGAGGACTTTGATATTCTTTTGACATCACTGGATTCACGTGGCATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAAATACACAATATGCAAAAATCGGAAGCATAGGGGAAGACTCTATTAAAATTGAAGTTAATGAAAAATATCCAATGCCTGAGCGCCATTCAGGATCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACTCTGGTACATCCGAAACTTCGTCATCCTTCAAAATTGAGCTTTGGAAAAGTGAGAACGAAAAGAAAGCTGCATTGAGAAGGTATCAAGATTTTCAGAAGTGGATGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCAATGAAATTTGGGGTAAAGAGATGCAAACCTCAGGTGGATATTTGTGAAATCTGTCTCAATCCTTATTTTGTCGAAGACTCCCATTGCAATTCCTGCCACCACACGTTTCCGTCAAATAATGGATTTAGTTTTTCTAAACATGCATTTCAATGTGTTGGCAATTTATCCAAAGATATTTGTATCATGGAGCATTCTCTTCCCCTAAGGACTAGATTGCTCAAGGTCCTACTGTCATATATGGAGGCATCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAACTGATTTTAGGAAGCATTGGGGTGTGAAGTTGAGTAAATCATCATCTGTTGAGGAACTTTTACAGATGTTGACCCTATTTGAAAAAGCACTACGGCGAGATTTTCTGTCATCAGACTTCTCTACCACAGACGAATTGTTGGGATTAAGCAGTAAGTCAAAAAGTGCTGTGCATGTGTCTGCTGATCCTGAATCAGTTGCTCTACTTCCATGGATTCCACAAACCACTGCAGCATTGTCTCTCAGGCTTTTTGAGTTCGATTCATCCATCAGCTATGTAAAGCTCGAGAAACTTGAGCCTGTTGAGGAAAAAGAAGCAGGAGAATACATTAGGCTTCCATCAAGATATACTCCCTTCAAGCCTAATAGGGAGGTTGAGCCAGCAGCTCTTGATCATGATGGATTCACCAAAGTTAAATCCTCTGCTAAAATTGTGCGAAGCAATAAACGTGGACGAGGGGCTAGTGATCATGCGCGGGGTAAAAATCTGTCTAAAAGAATGTACAATTCCAAACGAGATACTGGCCGTCGAAGCATTAAGATCACCGAGAATCTAAGTCAAAAACTAAAACTGCAAGGACGAGGAACGCAAGGACAAGGAGGTGGACGAGGTCGCCGAACGGTCAGACAACGTAGAGTAGGAAAAAGAGCTATTGAAGATTTGTTGCTGGGACATGAAGCAGCCAGTCATAGCTCCATGAGTGGGAGAGAACCATTTAGAAGCTTGCATGAAGAATGGGATGATGGAGAAAAGTCAAGTCCCATGACTCCTGTTCACGTTGGGGTTGATGAAAATAGTAACAGTGCTGAAGAGGTGGAATCTGATGATAATGCTCAACCAATGGAATTTGATGATAATGTTCAAGCAGTTGAATCTGATGATAATGCTCAAGCAATGGAATCTGATGATGATGCTCAAGCAGTAGAATATGATCATGGAAACTGGGAGATAGGTTATAACGGTGTCTCTCCTAATGGATGGAATAGGGATTTGGTTGGTATGAGTGATGAAGAAGTGGATGCTTATGAAGATGGCAATCACAATAACAATAGCAATGTTATCGGCTTTGAAGAGAATGAAGAGGAAGATTCCGAGGAAGATGTTATGAGCGAAGGTTCGGATGGCATGGCGAATAGAGTAGAGAATGTAGGAGGCTCGTATTTGTCTGTCTCTGAAGATTCTTCTGATTAG 5415 0.4172 MDAEEAENNTQKGDDGGENSNEYNNNNNNNGSNSKIMSSSEGQSKPKRQMKTPFQLEMLEKAYALETYPSESTRLELSEKLGLSDRQLQMWFCHRRLKDKKELPIKKPKKVPPLPDSPTDEPNPKLVIETLNEYGSGSGSGSSPFARPELRNVVPPRTYYESPQTIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLAVAEQQKRPSLAYDSKIYERHEVRTNKAMTRTLPEYTFVPNQSSIRSDKFGQLSQPHLYDPMEGPTRTPPFPIGNEHLPRTHATQSHSSRARLSSQQDKHMTPYASPPPLLSQHDKKVIPYPSPPRDNDVVPKREPHINIANVGMNSQFPDHQIVGQENSIALPGGQVIHNDAVLRVEKKRKSDDARVAKEVEAYEIRMKKELEKQDILRRKNEERMRKEMERQDRERRKEEERLMRERQREEERLRREQRRELERREKYLIKEHLRAEKRKQKEEIRKEKEAERRKAALEKANARRIAKESMELIDDEQLELMELAAASKGLPSIIQIDLDTLQNLESFRDSLCVFPPKSVKLKKPFAIQPWINSDQDVGNLLMVWRFLITFADVLVLWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIRNWQKNLNQLTWPEILRQLALSAGFGPKLRKRSITWSYANDKEEGRSGEDVISTLRNGSAALSAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLDLAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRKDPVDAEAILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSSGNQNTEQYHDMNVSSVNVNESSGHEVDLIQNELDTDLPCFLENGSTSKDVDLPSSVTVQPVAFENLNTGNLDDENMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSVRIVLEDRLEAANALKKQMWAEAQIDKVRLKDDYISKLDFQPLAGNKIETQEGNQSPLLDININNIKNEPSPSTAENQKGASSAQSLLIEKPSTIQDFGAGTGPETFQSQVAAQYSKRSRSQLKSYISHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGSWRLIDSEEDFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQYAKIGSIGEDSIKIEVNEKYPMPERHSGSDSPSSTLHDLNSGTSETSSSFKIELWKSENEKKAALRRYQDFQKWMWKECYNSSILCAMKFGVKRCKPQVDICEICLNPYFVEDSHCNSCHHTFPSNNGFSFSKHAFQCVGNLSKDICIMEHSLPLRTRLLKVLLSYMEASVLSEAFGTIWTTDFRKHWGVKLSKSSSVEELLQMLTLFEKALRRDFLSSDFSTTDELLGLSSKSKSAVHVSADPESVALLPWIPQTTAALSLRLFEFDSSISYVKLEKLEPVEEKEAGEYIRLPSRYTPFKPNREVEPAALDHDGFTKVKSSAKIVRSNKRGRGASDHARGKNLSKRMYNSKRDTGRRSIKITENLSQKLKLQGRGTQGQGGGRGRRTVRQRRVGKRAIEDLLLGHEAASHSSMSGREPFRSLHEEWDDGEKSSPMTPVHVGVDENSNSAEEVESDDNAQPMEFDDNVQAVESDDNAQAMESDDDAQAVEYDHGNWEIGYNGVSPNGWNRDLVGMSDEEVDAYEDGNHNNNSNVIGFEENEEEDSEEDVMSEGSDGMANRVENVGGSYLSVSEDSSD 1804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00514 1804 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Trre3g00514 1804 SMART HOX_1 44 106 IPR001356 GO:0003677
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1749 1804 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 268 320 - -
Trre3g00514 1804 Gene3D - 44 102 - -
Trre3g00514 1804 SMART testlast3 573 632 IPR018501 -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 421 455 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 856 879 - -
Trre3g00514 1804 ProSiteProfiles HARE-type HTH domain profile. 755 824 IPR007759 GO:0006355
Trre3g00514 1804 SUPERFAMILY Homeodomain-like 31 101 IPR009057 -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1069 1088 - -
Trre3g00514 1804 Pfam HB1, ASXL, restriction endonuclease HTH domain 755 823 IPR007759 GO:0006355
Trre3g00514 1804 Coils Coil 469 504 - -
Trre3g00514 1804 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1142 1214 IPR028941 -
Trre3g00514 1804 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 30 1804 IPR044977 GO:0006357
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1557 1586 - -
Trre3g00514 1804 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 967 1010 IPR028942 -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1645 1660 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 285 308 - -
Trre3g00514 1804 CDD homeodomain 47 102 IPR001356 GO:0003677
Trre3g00514 1804 MobiDBLite consensus disorder prediction 853 893 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1634 1688 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1254 1272 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1248 1272 - -
Trre3g00514 1804 Pfam DDT domain 574 629 IPR018501 -
Trre3g00514 1804 Coils Coil 398 463 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1598 1618 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 13 50 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1764 1778 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 103 122 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1554 1586 - -
Trre3g00514 1804 MobiDBLite consensus disorder prediction 1 55 - -
Trre3g00514 1804 ProSiteProfiles DDT domain profile. 573 632 IPR018501 -
Trre3g00514 1804 Pfam Homeodomain 45 101 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00514 Trre-Chr3 3444065 3451917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00514 38 1728 Homeobox Transcription Factor Family AT1G28420 48.514 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g00514 WSD 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00514 - - psat:127081735 2766.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00514 3 3444065 3451917 Trre3g00514 3 3444065 3451917 ECH
Trre7g03470 7 40723391 40732411 Trre3g00514 3 3444065 3451917 PCT