Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00513 ATGGGTTTGGATTACTATGAGATTTTGGAGGTTGAAAGGAATGCAACAGAAGAAGACTTGAAAAAAGCTTACAGAAAACTTGCTATGAAATGGCATCCTGATAAAAATCCCAACAATAACAAAGATGCTGAGATTAAATTCAAACTCATATCTGAAGCATACGAGGTTTTAAGTGATCCACAAAAGAAAGCGATTTATGATCAATATGGAGAAAGCGGTCTTAAAAACGGAATGACACCAACAGATGAAGGTGCAGCTTCATACTTCCAAACTCCGGATGGTAGAAGGTTTAGATTCAATCCCAGAAGTGCAAATGGCGTTTTTGCAGAAGCTTTTGGTTTTTCAAGCCCATGCGGCGGAGGAATGGGAATGAGGGGTGGCGGCTGCAGAGGCATGAGGGGTCGTTCGTGGGTGTCAAGTGCCTTCGGTGATATTTTTGGCCAAGACATGTTCGCAGAAAGCAGACAAGCGAGCCAAGTTCCAAGGCGCAAGGCACCTCCTATTGAAAATAAATTACCTTGCAGCCTTGAGGAGCTTTATAAAGGTACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCATATGCAAGCGGAAAAACTCTACCTGCAGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACATTTCCGGAGAAAGGAAATGAGCAACCAAATGTTACTGCTGCAGATATTATATTCATTATTGATGAGAAACCACACAGTGTATTTACAAGAGAAGGTAATGATTTGGTTGTGACACACAAGATATCACTTGCAGAAAGTGAATCTTTAACCAGAAGCTACACCTTCCAACTTACTACTTTGGATGGAAGGGACCTGACCATTGCCATAAACAATTTAATCGATCCAACCTATGAAGAAGTGGTCGCCGGAGAAGGCATGCCAATTTCCAAAAATCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATCCCCAAGCATGGTTCAAGCTGAAACAGAAAGCCAAAATTAA 1023 0.4096 MGLDYYEILEVERNATEEDLKKAYRKLAMKWHPDKNPNNNKDAEIKFKLISEAYEVLSDPQKKAIYDQYGESGLKNGMTPTDEGAASYFQTPDGRRFRFNPRSANGVFAEAFGFSSPCGGGMGMRGGGCRGMRGRSWVSSAFGDIFGQDMFAESRQASQVPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYASGKTLPAEEILTIEIQPGWKKGTKITFPEKGNEQPNVTAADIIFIIDEKPHSVFTREGNDLVVTHKISLAESESLTRSYTFQLTTLDGRDLTIAINNLIDPTYEEVVAGEGMPISKNPSQKGNLRIKFNITSPSMVQAETESQN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00513 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 335 IPR008971 GO:0006457|GO:0051082
Trre3g00513 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Trre3g00513 340 Pfam DnaJ domain 4 67 IPR001623 -
Trre3g00513 340 CDD DnaJ 4 59 IPR001623 -
Trre3g00513 340 Gene3D DnaJ domain 3 157 IPR036869 -
Trre3g00513 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre3g00513 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre3g00513 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre3g00513 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre3g00513 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Trre3g00513 340 CDD DnaJ_C 166 330 - -
Trre3g00513 340 Gene3D - 167 245 - -
Trre3g00513 340 SMART dnaj_3 3 62 IPR001623 -
Trre3g00513 340 FunFam Dnaj homolog subfamily b member 164 245 - -
Trre3g00513 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre3g00513 340 FunFam DnaJ subfamily B member 13 3 123 - -
Trre3g00513 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 257 IPR008971 GO:0006457|GO:0051082
Trre3g00513 340 Gene3D - 247 329 - -
Trre3g00513 340 Pfam DnaJ C terminal domain 168 329 IPR002939 -
Trre3g00513 340 FunFam DnaJ subfamily B member 13 247 330 - -
Trre3g00513 340 Coils Coil 6 26 - -
Trre3g00513 340 SUPERFAMILY Chaperone J-domain 4 90 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00513 Trre-Chr3 3441521 3443258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00513 4 67 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.647 3.55e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00513 K09510 - gmx:100794650 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00513 3 3441521 3443258 Trre3g00513 3 3441521 3443258 ECH