Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00512 ATGGGAGTGGATTACTACAAGATTTTGAAGGTCGACAAGAATGCCACAGATGAAGAATTGAAGAAAGCATATAGAAAACTTGCCATGAAGTGGCACCCTGATAAGAATCCAACCAATAAGAAAGAAGCTGAATCCAAATTCAAAGAGATTTCTGAAGCATACGAGGTTCTAAGTGATCCACAAAAGAAAGCAATTTATGATCAATATGGAGAAGAAGGGCTTAAAGGGCAAGTACCACCACCACAAGATGCAGCTGGTGGGGCATCATTTTTCCAAAGTGGAGATGGGCCAACAACATTTAGGTTCAATCCAAGAAATGCTGATGATATATTTGCAGAGTTTTTTGGATTTTCAAGCCCATTTGGAGGAATGGGTAATGGTGGGAATGGAATGAGAGGTGGGTCTAGATCCTTTGGTGGAATGTTTGGTGGTGGTGATGATATATTTTCTCAATTCGATGAAGGTCGGCCTATGCAGCGTCAGGGTCCTCGTAAGGCAGCTGCTATAGAAAATAGATTGCCTTGTAGCCTTGAAGAGCTCTATAAAGGGACCACCAAAAAGATGAAGATTTCAAGAGAAATTGCAGATGCAAGTGGGAAAACTATGCCGGTGGAAGAAATCTTAACAATTGAAGTAAAACCTGGATGGAAAAAAGGAACAAAAATCACATTCCCTGAGAAAGGAAATGAGCAACCAAATGTGATAGCAGCAGATCTTGTATTTGTCATTGATGAGAAACCACACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACAGAAAATATCACTTGCAGAAGCATTAACAGGTTACAATGTTCGTCTCACAACACTAGATGGAAGAGTTTTGAACATTCCTATAAACAATGTGATTCATCCAAACTATGAAGAGATTGTTTCAAAGGAAGGTATGCCTATTCCAAAAGATCCTAAACAGAAGGGTAATCTTAGGATCAAATTTAATATTAAGTTTCCAACAAGGTTGACATCTGAGCAGAAAGCTGGAATCAAGAAACTTCTGGCACCATAG 1035 0.3913 MGVDYYKILKVDKNATDEELKKAYRKLAMKWHPDKNPTNKKEAESKFKEISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPQDAAGGASFFQSGDGPTTFRFNPRNADDIFAEFFGFSSPFGGMGNGGNGMRGGSRSFGGMFGGGDDIFSQFDEGRPMQRQGPRKAAAIENRLPCSLEELYKGTTKKMKISREIADASGKTMPVEEILTIEVKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKISLAEALTGYNVRLTTLDGRVLNIPINNVIHPNYEEIVSKEGMPIPKDPKQKGNLRIKFNIKFPTRLTSEQKAGIKKLLAP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00512 344 Pfam DnaJ domain 4 67 IPR001623 -
Trre3g00512 344 FunFam DnaJ subfamily B member 13 3 125 - -
Trre3g00512 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Trre3g00512 344 CDD DnaJ 4 59 IPR001623 -
Trre3g00512 344 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Trre3g00512 344 Gene3D - 248 328 - -
Trre3g00512 344 FunFam Dnaj homolog subfamily b member 165 246 - -
Trre3g00512 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre3g00512 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre3g00512 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre3g00512 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre3g00512 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 336 IPR008971 GO:0006457|GO:0051082
Trre3g00512 344 CDD DnaJ_C 169 330 - -
Trre3g00512 344 Gene3D - 167 246 - -
Trre3g00512 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 254 IPR008971 GO:0006457|GO:0051082
Trre3g00512 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre3g00512 344 Pfam DnaJ C terminal domain 169 327 IPR002939 -
Trre3g00512 344 SMART dnaj_3 3 62 IPR001623 -
Trre3g00512 344 FunFam DnaJ subfamily B member 13 248 328 - -
Trre3g00512 344 Gene3D DnaJ domain 3 125 IPR036869 -
Trre3g00512 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00512 Trre-Chr3 3436379 3438607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00512 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.53e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00512 K09510 - cave:132172416 542.347