Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00498 ATGGCGCCGAAGGTTAAGAGCGATGGCGTTAAGGAGCCGCATTTTAGAGGAGTAAGGAAGAGACCATGGGGAAGATACGCCGCTGAGATCAGAGATCCAGGCAAGAAAAGCCGCGTTTGGCTCGGAACTTTCGACACGGCGGAAGAGGCGGCGAGAGCATACGACACCGCCGCATTCAAATTTCGCGGTCTAAAGGCTAAAACAAATTTTCCTTTCCATATCCAGAGTAGTCCTAGTCAGAGCAGCACCGTTGAATCCTCCAGCCGTGACCGTGATGCTGCCGCTGATTCTTCACCGCTTGATCTAAACTTGACTCCTTCGATCAACGGTCCTGTTCGGTTTCCGTTTCAGCACCGGTACACTCCGATTCCGACGGTTAATCAGACGTTTTGCTTCGATGATGTTCTACGCGCCGGGATGGTGAATTACGGTTATACGACGGCACCAGCACAGAGTGATTCAGATTCTTCGTCGGTGATTGATCTGAATCACCGTGATGACGGTGTTAAAAGTGTTAGAAACTTGGATCTAGATCTTAACTACCCTCCTCCGGAATATACGCTATAA 567 0.4991 MAPKVKSDGVKEPHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAFKFRGLKAKTNFPFHIQSSPSQSSTVESSSRDRDAAADSSPLDLNLTPSINGPVRFPFQHRYTPIPTVNQTFCFDDVLRAGMVNYGYTTAPAQSDSDSSSVIDLNHRDDGVKSVRNLDLDLNYPPPEYTL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00498 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 125 - -
Trre3g00498 188 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Trre3g00498 188 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Trre3g00498 188 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Trre3g00498 188 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Trre3g00498 188 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Trre3g00498 188 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Trre3g00498 188 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Trre3g00498 188 MobiDBLite consensus disorder prediction 72 104 - -
Trre3g00498 188 MobiDBLite consensus disorder prediction 72 88 - -
Trre3g00498 188 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Trre3g00498 188 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00498 Trre-Chr3 3369825 3370433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00498 11 184 AP2-EREBP Transcription Factor Family AT5G44210 46.369 5.96e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g00498 AP2 5.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00498 K09286 - gmx:100170742 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00498 3 3369825 3370433 Trre3g00498 3 3369825 3370433 ECH