Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00497 ATGGCTTCTTCATCTGCTTCTGGAAACCGTGAAGGACACTACAGAGGTGTTAGGAAGCGACCATGGGGACGCTATGCTGCTGAGATTCGTGATCCATGGAAGAAGACACGTGTTTGGTTAGGTACATTTGATACACCTGAAGAAGCTGCTCTTGCTTACGACGGCGCCGCTCGTTCTCTCCGTGGAACTAAAGCTAAAACTAACTTCCCACCGGCGCCTGGCTCCGGTGGTCTTTGTGTTGATCTCAACGCTCCTTCTTCTGATCTTAGATGGCCATCTGTTGCTTCACGTGGGATTAAGCTTACTGAGTTTCTTCAAACTGGTGTTCTTAAGGATTTCAATGCTCCTCCGCCTCCTCAACAACAACCTCCTCTTGTCACGGTGGCTGGACAGAGACAAAGTGAAGGTACTTTTGGTGTTTCCGGGAGAGTTATGATGGCTGAGAACTCTCCAACTGCAGCTTATTTGGGACTTGTTAGACGTGGGATTCCGATTGACTTGAATGAACCTCCACCTTTGTGGCTGTGA 528 0.4886 MASSSASGNREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGTKAKTNFPPAPGSGGLCVDLNAPSSDLRWPSVASRGIKLTEFLQTGVLKDFNAPPPPQQQPPLVTVAGQRQSEGTFGVSGRVMMAENSPTAAYLGLVRRGIPIDLNEPPPLWL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00497 175 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Trre3g00497 175 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Trre3g00497 175 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 108 - -
Trre3g00497 175 FunFam Ethylene-responsive transcription factor 2 13 71 - -
Trre3g00497 175 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Trre3g00497 175 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Trre3g00497 175 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Trre3g00497 175 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Trre3g00497 175 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Trre3g00497 175 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00497 Trre-Chr3 3334339 3334866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00497 1 175 AP2-EREBP Transcription Factor Family AT1G28360 48.500 2.60e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre3g00497 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00497 - - cam:101504196 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00497 3 3334339 3334866 Trre3g00497 3 3334339 3334866 ECH