Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00494 ATGGAAGAGGAGGAAGAGCAAGAAACAGCAGTTGAGGAGAAAGATAAAGACAAAGATGAGGTTCCAGATTCTCTTCCCGATGCAGATAAACATAGCAAAGATTCAAGCCAGCATATGGAGCTTGATGGGAAAGAGGAGAATTTGGAGCCAGTTTCTTCTGTGCCCGAGAACCCTGAAGTAATACGGCCAGCACATGATATGGAAGAGAATGATGCCATGCTTAAAGCCTCTGTTCCGTCACATGAAGAATTGACATTGAAAAAGGAGGAGTTCCCCGTGAAACAAGAAGTTTTGAGTCCTCCAAAACCAAGTGAAAACTTGATTCCTGCTGAAGATGGGAAAAATCTAGGATTAAACATTGATGTTGAAAGTTCTGGATATCTTCAGAGGAAAACCCTTGGAGGATGCAGTGAACAAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGACATTGATTCTAGGGCCACCAAGTTATCTAGTGATACGGGAAAAGATGTGGTTACTGGAATCATACCGAGAGATAATGTTGTTGAGGATGCTGATCGCGGTCAGAACTCTCGGGAGAAAATTACGCAGTCAGAGATGGAGTCACGGGTTGATGTGAAACAAAAGCCGTCAAGGACTAGAAGTCTGTCTCCCAGTGCCGAGATTAAAGATGGAAACAAAAGACCTGCAATTGCATGTGCTTTTTTCGCTAAAGGTTGGTGCATCAGAGGCAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGTTAATAATACCGACCAGGGGGCTGAAGGAGACCTAGTTACTGCACATCAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAATGTTGACAGGTCAAGAACGAATGAGGGAGAAGCAAGTCCAAGTTGGCATTCATTTCGTGAAAAAGAGAAGTATAGATCTGCATTTAATACATCAAACAATTATTTCGGCTCAAATCTTTCCTCGTTTTCATCCCGTGAAGAGGGAATGTCTGCTATTCGAAACTACCATATGTACAGAGGATATACATCCAGAGAAGATTTTGGTTCATCTTTAGGTGCAACTACTTTGGACTCTCAAAAGCTTTTGAACAGTGAGAAGGAATATCACGCTCATAAGTCCACTTACTCTTCAGATCGGGAAGATATGCATCTAGTTGGTTCATCTAGGGTTCCACCGCATGCTAATGGATATAAACTAAAAACCCGCTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCATTTTTTATCACTTCTATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATCGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAAGTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGAAAAAAGTTCAGTATCTTCACATAATAAGCTTTATAAAAATGAGCCAAACAGAAGTTCTGTTCCCCGCGGAAATGATTGTCTTGGAACCAAAACAGAAATAACATCAGGAACTTGTGAAAACTACCATAATGGTAACATAGGTGTGGGACAACATGCCTTTGGTGTTGAAGATAGGATGGAAACATCGAAAAAACGGACTGAGCATGATGCCATGCATCATGGTGATGGATCAGAGCACATAAAGAAGAGAGTAGCAAAGGATGATAAAATTCATGAAATGGAGGTTGACTTTCTGCCGGATAGCAGTATGCACAAAGAAACAAAAGCGCTGAAATTTTTTCGTGCAACCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGCCGTCTTAGCAAGGATGCACATGTACTGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACAGCAAATTCCGACCACCGAAGATAATGCTAAGCATTATGTTTCTTCATGTCGGCCGAAGATTGCAAAGTTAGTCCAGGGATATGTCAATAAATATAGCAAATCTTGA 2028 0.4073 MEEEEEQETAVEEKDKDKDEVPDSLPDADKHSKDSSQHMELDGKEENLEPVSSVPENPEVIRPAHDMEENDAMLKASVPSHEELTLKKEEFPVKQEVLSPPKPSENLIPAEDGKNLGLNIDVESSGYLQRKTLGGCSEQDCNSKASLSDVKDIDSRATKLSSDTGKDVVTGIIPRDNVVEDADRGQNSREKITQSEMESRVDVKQKPSRTRSLSPSAEIKDGNKRPAIACAFFAKGWCIRGSSCSFLHIKDSVNNTDQGAEGDLVTAHQKRELKLEKGVKENVDRSRTNEGEASPSWHSFREKEKYRSAFNTSNNYFGSNLSSFSSREEGMSAIRNYHMYRGYTSREDFGSSLGATTLDSQKLLNSEKEYHAHKSTYSSDREDMHLVGSSRVPPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKAFLIRGSSIQASSQVRTYDDSAAVGKHMSDLNDEKSSVSSHNKLYKNEPNRSSVPRGNDCLGTKTEITSGTCENYHNGNIGVGQHAFGVEDRMETSKKRTEHDAMHHGDGSEHIKKRVAKDDKIHEMEVDFLPDSSMHKETKALKFFRATLVDLVKELLKPFWHEGRLSKDAHVLIVKKSVDKVVSTLEPQQIPTTEDNAKHYVSSCRPKIAKLVQGYVNKYSKS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00494 675 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 248 IPR000571 GO:0046872
Trre3g00494 675 MobiDBLite consensus disorder prediction 1 68 - -
Trre3g00494 675 MobiDBLite consensus disorder prediction 181 220 - -
Trre3g00494 675 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 7 674 - -
Trre3g00494 675 SUPERFAMILY CCCH zinc finger 224 248 IPR036855 GO:0046872
Trre3g00494 675 MobiDBLite consensus disorder prediction 492 509 - -
Trre3g00494 675 MobiDBLite consensus disorder prediction 11 49 - -
Trre3g00494 675 MobiDBLite consensus disorder prediction 480 509 - -
Trre3g00494 675 MobiDBLite consensus disorder prediction 85 112 - -
Trre3g00494 675 ProSiteProfiles Zinc finger C3H1-type profile. 224 251 IPR000571 GO:0046872
Trre3g00494 675 MobiDBLite consensus disorder prediction 181 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00494 Trre-Chr3 3304215 3308033 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre3g00494 zf-CCCH 4.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00494 - - cam:101503101 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00494 3 3304215 3308033 Trre3g00494 3 3304215 3308033 ECH