Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00489 ATGGATGAAAGTTGGGGTGAAGGAAAGAGAAACTATGAGTACATAGAAGAAAATGAGTATGAAGAAGAAGAAGATCAACAAGATGTGAGTTATGGAGATGGAAAGAAGAAAAGAGTTGTGAATGATGGTTACAACAAGAAAGGATCTAAAGCTGGAGGATCAGTGCCACCATGTTGTCAAGTTGATAACTGTAATGTTGATCTAAGTGGTGCTAAGCAGTACCATAAACGCCATAAGGTTTGTGAAAATCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTTAAAAAGAAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAGTGCATCGGAATATCAAGGAGAAGTTCATTGA 429 0.3893 MDESWGEGKRNYEYIEENEYEEEEDQQDVSYGDGKKKRVVNDGYNKKGSKAGGSVPPCCQVDNCNVDLSGAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKSASEYQGEVH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00489 142 Pfam SBP domain 59 132 IPR004333 GO:0003677
Trre3g00489 142 MobiDBLite consensus disorder prediction 1 36 - -
Trre3g00489 142 Gene3D - 49 120 IPR036893 GO:0003677|GO:0005634
Trre3g00489 142 FunFam Squamosa promoter-binding-like protein 14 50 120 - -
Trre3g00489 142 SUPERFAMILY SBT domain 56 136 IPR036893 GO:0003677|GO:0005634
Trre3g00489 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 134 IPR044817 GO:0003677
Trre3g00489 142 MobiDBLite consensus disorder prediction 1 16 - -
Trre3g00489 142 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Trre3g00489 142 PIRSF SBP 6 142 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00489 Trre-Chr3 3270009 3272105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00489 43 136 SBP-box Gene Family AT2G33810 64.894 4.57e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre3g00489 SBP 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00489 - - gmx:100782285 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00489 3 3270009 3272105 Trre3g00489 3 3270009 3272105 ECH
Trre7g03505 7 41511806 41516112 Trre3g00489 3 3270009 3272105 PCT