Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00482 ATGAAGTTCAACGTTGCAAATCCTACCACTGGATGTCAGAAGAAGCTGGAAATCGATGATGATCAGAAGCTGCGAGCTTTTTGGGACAAGAGGATCTCTCAAGAAGTTTTGGGTGATGCTTTGGGAGAGGAATTCAAAGGATATGTTTTTAAAATCACTGGAGGATGTGACAAACAAGGGTTTCCAATGAAGCAGGGTGTGTTAACTCCTGGCCGTGTTCGCCTTTTGCTTCACCGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATTTGCCAGGCTTGACTGACGTTGAAAAGCCAAGAATGAGGGGTCCCAAAAGAGCTTCCAAAATCCGTAAGCTTTTCAATTTGTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGTACTTTCACAACTAAAGCTGGGAAAAAGGTGAGCAAAGCGCCAAAGATTCAGCGCCTGGTCACACCCCTGACACTTCAAAGAAAGAGGGCTAGAATTGCTGATAAGAAGAAAAGAATTGCCAAAGCTAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAAAGGGAACGACGTAGTGAGAGTTTGGCCAAGAAGAGATCAAGGCTCTCCACCGCAAAGCCAGGTGTCGTCGCATAG 747 0.4659 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTAKPGVVA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00482 248 Coils Coil 189 216 - -
Trre3g00482 248 MobiDBLite consensus disorder prediction 219 237 - -
Trre3g00482 248 MobiDBLite consensus disorder prediction 219 248 - -
Trre3g00482 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre3g00482 248 Gene3D - 133 234 - -
Trre3g00482 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Trre3g00482 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre3g00482 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre3g00482 248 PIRSF RPS6e 1 246 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00482 Trre-Chr3 3217062 3219255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00482 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.984 6.03e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00482 K02991 - gmx:100786559 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03512 7 41710491 41712683 Trre3g00482 3 3217062 3219255 PCT