Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trre3g00482
ATGAAGTTCAACGTTGCAAATCCTACCACTGGATGTCAGAAGAAGCTGGAAATCGATGATGATCAGAAGCTGCGAGCTTTTTGGGACAAGAGGATCTCTCAAGAAGTTTTGGGTGATGCTTTGGGAGAGGAATTCAAAGGATATGTTTTTAAAATCACTGGAGGATGTGACAAACAAGGGTTTCCAATGAAGCAGGGTGTGTTAACTCCTGGCCGTGTTCGCCTTTTGCTTCACCGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATTTGCCAGGCTTGACTGACGTTGAAAAGCCAAGAATGAGGGGTCCCAAAAGAGCTTCCAAAATCCGTAAGCTTTTCAATTTGTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGTACTTTCACAACTAAAGCTGGGAAAAAGGTGAGCAAAGCGCCAAAGATTCAGCGCCTGGTCACACCCCTGACACTTCAAAGAAAGAGGGCTAGAATTGCTGATAAGAAGAAAAGAATTGCCAAAGCTAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAAAGGGAACGACGTAGTGAGAGTTTGGCCAAGAAGAGATCAAGGCTCTCCACCGCAAAGCCAGGTGTCGTCGCATAG
747
0.4659
MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTAKPGVVA
248
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trre3g00482
248
Coils
Coil
189
216
-
-
Trre3g00482
248
MobiDBLite
consensus disorder prediction
219
237
-
-
Trre3g00482
248
MobiDBLite
consensus disorder prediction
219
248
-
-
Trre3g00482
248
PANTHER
40S RIBOSOMAL PROTEIN S6
1
239
IPR001377
GO:0003735|GO:0005840|GO:0006412
Trre3g00482
248
Gene3D
-
133
234
-
-
Trre3g00482
248
ProSitePatterns
Ribosomal protein S6e signature.
52
63
IPR018282
GO:0003735|GO:0005840|GO:0006412
Trre3g00482
248
SMART
Ribosomal_S6e_2
1
128
IPR001377
GO:0003735|GO:0005840|GO:0006412
Trre3g00482
248
Pfam
Ribosomal protein S6e
1
128
IPR001377
GO:0003735|GO:0005840|GO:0006412
Trre3g00482
248
PIRSF
RPS6e
1
246
IPR014401
GO:0003735|GO:0005840|GO:0006412
Showing 1 to 9 of 9 entries
Previous
1
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Trre3g00482
Trre-Chr3
3217062
3219255
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trre3g00482
1
248
Cytoplasmic Ribosomal Protein Gene Family
AT5G10360
72.984
6.03e-120
338
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trre3g00482
K02991
-
gmx:100786559
432.18
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Trre7g03512
7
41710491
41712683
Trre3g00482
3
3217062
3219255
PCT
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows