Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00481 ATGGACTCAAACAATAATAATCATCCTCCATGGATGAAGAATGAGGCAATGTTTCGCTCCTATGTGCATGAATATATGATCAAAAGAGGAATGCATAACACTGCTGAGATTTTCATGAACGAAGCTAACGTTCCCCAAACTCATCCTATTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTCCGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTCTGAGGTATTTTCATCCAGACTAAGGAGTCATCAGGAGTCTCAGCCGCAATCCCCTAATATGGTCCCAAGAATGACAGATACTTCAATGAATACATCCTCTTTTAGAATCCCTCAAATGCCAATGAATGAGCAGAGACCTCAACAATTTCAAGCCAGCTCTAGCTTTAACAACATGATGGCACAGACAGCTTCTAGATTGATGCCTCCGAGACTGCACAATAATAATAATCCCCTTGGAAATTTGGCTGAACATATTGATCCAAGTTTGGCTCCTCTTATCAATGAAAATGATCCAAATTTCTTCTCACCGATGAGTTCAAACCATCCATTGCAAGGTGTAGGCAACCAGCCCCAGAAGCAAGTCTATAAGGACAATGGAATTGTTATGCGTGTGGGGCGTCTCGTACCTAGTAACCCTCCGGATGTAAGACAAAAAGCAATGTTGGCTTCAGGTGGACCTCAAGTAACAAATAACTATAAAGTTCCTAATCTTGTGCCAATAAATGGAGTGCCATTAAATAACCAGATGCTAACTTCTCTTTTGCAATTGCAAAACAATGGACAGCAGTTTCAAGTGTTGAACACACAAAATCAGGAAGCAATCCCGACTCAAGCCCTTGCAAGTACTCCAAACATTCAGACTTTCGTAGCTCATATAAACTCTACCAGACGTGACAGTCAATATCTAGGGACTCCCAAGGCTGAATCAAGTAACAACGATAGGGAGATGATGGACCAAACCATTAGAACTGAAGAACCTCAATGCAATCAGGATCAGCAAATGCAGTCCCAAAATCTCAATGACAGCAGAAAGAGAAAGATAGTAGCACCCTTAGGAGCTGGAGAGTGTGTCCCGGACCATGTGGATGCAGCAGATGGAAAACCAGCAGAGGAAAATGTGGATTCTTATCTGTCTATTGAAAATGGAAATGCTGATCATAAAACTACGCCTTTCAGCAATCTGAAACGAATTTTAGGAACAGACAAGAGAAGTGGAAATAAAGGTTTTTCATTCAAAGAGGTTGGATGTCTTCACTCGAGCAAAAACAAGGTTTTGGCATGCCATTTTTCATCAAATGGAAATTTTTTGGCTAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAACATGGAAACTTTTGAAAGTTGTGCTACTGAGGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCAGGCTCAAATATATTTGCGACATCTTCCTTTGATAAATCCATAAGAGTATGGGATACAAACAGACCAAACAAATCATTATTCAAACTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGCAGACCTTCTTTGTTCGTGTGATGGCAATGATATAATTCGTCTGTGGAATGTGAACCGAGGTTCTTGCAAGCATGTAACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTACGGGAAGCTTCTAGGTACTTCTACTGGAAATAATCTCAAAATATTTGATGTTGAGGCTGATAAAGTTGTGTACAATCTAAAGGGACATGATAAAGATGTTGTTTCCATTTGTTGGGATATACATGGAAAGTATATTGCCTCTGTCAGTGAAGATAGTGCACGAGTCTGGTCGGACGGAAAATGCATCCATGAGTTGCTTTCAAACGGGAACAAGTTTCAGTCGTGCATATTTCATCCAGGATATTCTAACCTCTTAGTTGTTGGTGGCTATCAGTCCCTTGAACTCTGGAGTCCAACTGAGGGTAATAAAACAATGTCAATTTCTGCGCACAAGGGATTGATTACAGGACTAACAGCTTCACCACAAAATGAATTGATTGCCTCGGCTAGCCATGATTGCCTTGTGAAACTATGGAGATAA 2100 0.4062 MDSNNNNHPPWMKNEAMFRSYVHEYMIKRGMHNTAEIFMNEANVPQTHPIDMQFVDSMFDDSPEGVLHEWWSVFSEVFSSRLRSHQESQPQSPNMVPRMTDTSMNTSSFRIPQMPMNEQRPQQFQASSSFNNMMAQTASRLMPPRLHNNNNPLGNLAEHIDPSLAPLINENDPNFFSPMSSNHPLQGVGNQPQKQVYKDNGIVMRVGRLVPSNPPDVRQKAMLASGGPQVTNNYKVPNLVPINGVPLNNQMLTSLLQLQNNGQQFQVLNTQNQEAIPTQALASTPNIQTFVAHINSTRRDSQYLGTPKAESSNNDREMMDQTIRTEEPQCNQDQQMQSQNLNDSRKRKIVAPLGAGECVPDHVDAADGKPAEENVDSYLSIENGNADHKTTPFSNLKRILGTDKRSGNKGFSFKEVGCLHSSKNKVLACHFSSNGNFLASAGHDKKVFIWNMETFESCATEETHSLLITDVRFRPGSNIFATSSFDKSIRVWDTNRPNKSLFKLSGHSEQVMSLDFHPRKADLLCSCDGNDIIRLWNVNRGSCKHVTKGGSKQVRFQPLYGKLLGTSTGNNLKIFDVEADKVVYNLKGHDKDVVSICWDIHGKYIASVSEDSARVWSDGKCIHELLSNGNKFQSCIFHPGYSNLLVVGGYQSLELWSPTEGNKTMSISAHKGLITGLTASPQNELIASASHDCLVKLWR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 493 IPR001680 GO:0005515
Trre3g00481 699 Pfam WD domain, G-beta repeat 500 537 IPR001680 GO:0005515
Trre3g00481 699 Pfam WD domain, G-beta repeat 420 451 IPR001680 GO:0005515
Trre3g00481 699 Pfam WD domain, G-beta repeat 463 493 IPR001680 GO:0005515
Trre3g00481 699 Pfam WD domain, G-beta repeat 662 698 IPR001680 GO:0005515
Trre3g00481 699 Pfam WD domain, G-beta repeat 583 617 IPR001680 GO:0005515
Trre3g00481 699 SUPERFAMILY WD40 repeat-like 412 698 IPR036322 GO:0005515
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 454 - -
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 546 IPR001680 GO:0005515
Trre3g00481 699 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 13 699 IPR044716 GO:0003714
Trre3g00481 699 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 699 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 618 657 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 497 537 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 540 576 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 660 699 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 454 493 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 579 617 IPR001680 GO:0005515
Trre3g00481 699 SMART WD40_4 412 451 IPR001680 GO:0005515
Trre3g00481 699 Pfam LisH 20 42 IPR006594 GO:0005515
Trre3g00481 699 MobiDBLite consensus disorder prediction 298 320 - -
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 699 - -
Trre3g00481 699 Gene3D - 363 555 IPR015943 GO:0005515
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 542 - -
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 461 493 - -
Trre3g00481 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 460 IPR001680 GO:0005515
Trre3g00481 699 Gene3D - 556 699 IPR015943 GO:0005515
Trre3g00481 699 MobiDBLite consensus disorder prediction 298 312 - -
Trre3g00481 699 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Trre3g00481 699 CDD WD40 415 699 - -
Trre3g00481 699 ProSitePatterns Trp-Asp (WD) repeats signature. 438 452 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00481 Trre-Chr3 3209252 3214974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00481 493 698 Miscellaneous Gene Families AT5G08390 25.943 5.02e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre3g00481 WD40 0.00097 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00481 - - gsj:114387334 776.163