Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00480 ATGGACTCAAACAATAATAATCATCCTCCATGGATGAAGAATGAGGCAATGTTTCGCTCCTATGTGCATGAATATATGATCAAAAGAGGAATGCATAACACTGCTGAGATTTTCATGAACGAAGCTAACGTTCCCCAAACTCATCCTATTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTCCGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTCTGAGGTATTTTCATCCAGACTAAGGAGTCATCAGGAGTCTCAGCCGCAATCCCCTAATATGGTGGTCCCAAGAATGACAGATACTTCAATGAATACATCCTCTTTTAGAATCCCTCAAATGCCAATGAATGAGCAGAGACCTCAACAATTTCAAGCCAGCTCTAGCTTTAACAACATGATGGCACAGACAGCTTCTAGATTGATGCCTCCGAGACTGCACAATAATAATAATCCCCTTGGAAATTTGGCTGAACATATTGATCCAAGTTTGGCTCCTCTTATCAATGAAAATGATCCAAATTTCTTCTCACCGATGAGTTCAAACCATCCATTGCAAGGTGTAGGCAACCAGCCCCAGAAGCAAGTCTATAAGGACAATGGAATTGTTATGCGTGTGGGGCGTCTCGTACCTAGTAACCCTCCGGATGTAAGACAAAAAGCAATGTTGGCTTCAGGTGGACCTCAAGTAACAAATAACTATAAAGTTCCTAATCTTGTGCCAATAAATGGAGTGCCATTAAATAACCAGATGCTAACTTCTCTTTTGCAATTGCAAAACAATGGACAGCAGTTTCAAGTGTTGAACACACAAAATCAGGAAGCAATCCCGACTCAAGCCCTTGCAAGTACTCCAAACATTCAGACTTTCGTAGCTCATATAAACTCTACCAGACGTGACAGTCAATATCTAGGGACTCCCAAGGCTGAATCAAGTAACAACGATAGGGAGATGATGGACCAAACCATTAGAACTGAAGAACCTCAATGCAATCAGGATCAGCAAATGCAGTCCCAAAATCTCAATGACAGCAGAAAGAGAAAGATAGTAGCACCCTTAGGAGCTGGAGAGTGTGTCCCGGACCATGTGGATGCAGCAGATGGAAAACCAGCAGAGGAAAATGTGGATTCTTATCTGTCTATTGAAAATGGAAATGCTGATCATAAAACTACGCCTTTCAGCAATCTGAAACGAATTTTAGGAACAGACAAGAGAAGTGGAAATAAAGGTTTTTCATTCAAAGAGGTTGGATGTCTTCACTCGAGCAAAAACAAGGTTTTGGCATGCCATTTTTCATCAAATGGAAATTTTTTGGCTAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAACATGGAAACTTTTGAAAGTTGTGCTACTGAGGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCAGGCTCAAATATATTTGCGACATCTTCCTTTGATAAATCCATAAGAGTATGGGATACAAACAGACCAAACAAATCATTATTCAAACTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGCAGACCTTCTTTGTTCGTGTGATGGCAATGATATAATTCGTCTGTGGAATGTGAACCGAGGTTCTTGCAAGCATGTAACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTACGGGAAGCTTCTAGGTACTTCTACTGGAAATAATCTCAAAATATTTGATGTTGAGGCTGATAAAGTTGTGTACAATCTAAAGGGACATGATAAAGATGTTGTTTCCATTTGTTGGGATATACATGGAAAGTATATTGCCTCTGTCAGTGAAGATAGTGCACGAGTCTGGTCGGACGGAAAATGCATCCATGAGTTGCTTTCAAACGGGAACAAGTTTCAGTCGTGCATATTTCATCCAGGATATTCTAACCTCTTAGTTGTTGGTGGCTATCAGTCCCTTGAACTCTGGAGTCCAACTGAGGGTAATAAAACAATGTCAATTTCTGCGCACAAGGGATTGATTACAGGACTAACAGCTTCACCACAAAATGAATTGATTGCCTCGGCTAGCCATGATTGCCTTGTGAAACTATGGAGATAA 2103 0.4066 MDSNNNNHPPWMKNEAMFRSYVHEYMIKRGMHNTAEIFMNEANVPQTHPIDMQFVDSMFDDSPEGVLHEWWSVFSEVFSSRLRSHQESQPQSPNMVVPRMTDTSMNTSSFRIPQMPMNEQRPQQFQASSSFNNMMAQTASRLMPPRLHNNNNPLGNLAEHIDPSLAPLINENDPNFFSPMSSNHPLQGVGNQPQKQVYKDNGIVMRVGRLVPSNPPDVRQKAMLASGGPQVTNNYKVPNLVPINGVPLNNQMLTSLLQLQNNGQQFQVLNTQNQEAIPTQALASTPNIQTFVAHINSTRRDSQYLGTPKAESSNNDREMMDQTIRTEEPQCNQDQQMQSQNLNDSRKRKIVAPLGAGECVPDHVDAADGKPAEENVDSYLSIENGNADHKTTPFSNLKRILGTDKRSGNKGFSFKEVGCLHSSKNKVLACHFSSNGNFLASAGHDKKVFIWNMETFESCATEETHSLLITDVRFRPGSNIFATSSFDKSIRVWDTNRPNKSLFKLSGHSEQVMSLDFHPRKADLLCSCDGNDIIRLWNVNRGSCKHVTKGGSKQVRFQPLYGKLLGTSTGNNLKIFDVEADKVVYNLKGHDKDVVSICWDIHGKYIASVSEDSARVWSDGKCIHELLSNGNKFQSCIFHPGYSNLLVVGGYQSLELWSPTEGNKTMSISAHKGLITGLTASPQNELIASASHDCLVKLWR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 455 - -
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 543 - -
Trre3g00480 700 MobiDBLite consensus disorder prediction 299 313 - -
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 461 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 619 658 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 661 700 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 498 538 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 541 577 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 455 494 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 580 618 IPR001680 GO:0005515
Trre3g00480 700 SMART WD40_4 413 452 IPR001680 GO:0005515
Trre3g00480 700 CDD WD40 416 700 - -
Trre3g00480 700 Gene3D - 364 556 IPR015943 GO:0005515
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 668 700 - -
Trre3g00480 700 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 547 IPR001680 GO:0005515
Trre3g00480 700 Gene3D - 557 700 IPR015943 GO:0005515
Trre3g00480 700 SUPERFAMILY WD40 repeat-like 413 699 IPR036322 GO:0005515
Trre3g00480 700 Pfam LisH 20 42 IPR006594 GO:0005515
Trre3g00480 700 ProSitePatterns Trp-Asp (WD) repeats signature. 439 453 IPR019775 -
Trre3g00480 700 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 13 700 IPR044716 GO:0003714
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Trre3g00480 700 MobiDBLite consensus disorder prediction 299 321 - -
Trre3g00480 700 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 700 IPR001680 GO:0005515
Trre3g00480 700 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Trre3g00480 700 Pfam WD domain, G-beta repeat 421 452 IPR001680 GO:0005515
Trre3g00480 700 Pfam WD domain, G-beta repeat 584 618 IPR001680 GO:0005515
Trre3g00480 700 Pfam WD domain, G-beta repeat 501 538 IPR001680 GO:0005515
Trre3g00480 700 Pfam WD domain, G-beta repeat 464 494 IPR001680 GO:0005515
Trre3g00480 700 Pfam WD domain, G-beta repeat 663 699 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00480 Trre-Chr3 3209252 3214974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00480 494 699 Miscellaneous Gene Families AT5G08390 25.943 4.86e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre3g00480 WD40 0.00098 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00480 - - gsj:114387334 777.319