Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00479 ATGGACTCAAACAATAATCATTCTCCATGGAAGAATGAGGCAATGTTTCACCGCTATGTGCATGAATATATGATCAAAAGAGGAATGCATGACTCCGCCGAGATTTTCATGAATGAAGCTAACGTTCCCGAAACTCTTCCTATTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTTCGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTATGAGATATTTTTATCAAAACTAAGGAGTCGTCAGGAATCTGAACCACAGTCCCCTAATATGGCGGTCGCGAGAATGATCGATACTTCAACGAATATATCCTCTTTTAGAATCCCTCAAATGCCGATGAATGAGCAGAGACCTCAACAATTTCAAGCCAGCTCTAGCTTTAACAACATGATGGCACAGACAGCTTCTAGATCGATGCCTCCGAGACTGCACAATAATAATAATACCCTTGGAAATTTGGCTGAACATATTGATCCAAGTTTGGTTGCTCATATCAATGAAAATGATCTGAACTTCTTCTTAGGATGA 534 0.3989 MDSNNNHSPWKNEAMFHRYVHEYMIKRGMHDSAEIFMNEANVPETLPIDMQFVDSMFDDSSEGVLHEWWSVFYEIFLSKLRSRQESEPQSPNMAVARMIDTSTNISSFRIPQMPMNEQRPQQFQASSSFNNMMAQTASRSMPPRLHNNNNTLGNLAEHIDPSLVAHINENDLNFFLG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00479 177 SMART Lish 12 44 IPR006594 GO:0005515
Trre3g00479 177 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 137 IPR044716 GO:0003714
Trre3g00479 177 Pfam LisH 18 40 IPR006594 GO:0005515
Trre3g00479 177 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00479 Trre-Chr3 3203808 3205689 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre3g00479 LisH 3.5e-06 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00479 - - psat:127082017 176.792