Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00474 ATGGTAGGAGTTGCATTCGATGTCGGAGCCGTTCCTTTCAATCCCGACGGATGGGGTCCAATGGATTCCACAACCGCCGCCAACAACAACAACAACCTTCCTCTCAATGTCCCTTTCGCCCCTTTCAATCGCTCCGACAAATTAGGTCGAATCGCCGATTGGACCCGTAATTTCAACAACCAGAATCGAACCAGAAACCCCGCCGATTCCGCTTTCGATTTCACTCTCGACGATTCCTTCCCTGCTTCCGCCGATGACGACAATACCTTCCGTCTCGTTGACGGTAAACCACCACCGCGACCTAAATTCGGCCCCAAATGGCGCTACCAGCAACAACGACAACTCCCTCAGCGTCGTGACGAAGAAGTTGAAGCTAAGAAACGTGAGGCGGAGAAAGATAGAGCTCGTCGTGATCGTATCTATCATCAGAATCGTTCAAACCCTCATAACACTCGCCGTGAAGCTGCTGTTTGTAAATCTTCGGTTGAAATTCAACCGGAGTGGAATATGCATGATCAGATTCCATTTTCGACTTTCACCAAGCTTTCCTACAATGTTCCTGAACCTGAAGATCTTCTCATGTGTGGTGCTCTTGAGTATTACGATCGTACTGTTGATCGAATCACCCCGAAAAATGAACGTAGGCTTGAGAGGTTTAAGAATAGGAACTTCTTCAAGGTTACTACCACTGATGATCCTGTTATTAGGAGACTTGCTAATGAGGATAAAGCAACGGTGTTTGCGACCGATACTATTCTTTCGACACTTATGTGTGCTTCTAGGTCTGTTTATTCATGGGATATTGTTGTTCAGAGAGTTGGGAATAAGCTATTCTTTGATAAGCGTGATGGGTCACAGTTGGATTTGCTTGCTGTTCATGAGACTTCACAGGAGCCTTTGCCTGAAGCTAAGGATGATATCAACTCTGCGCATTCGTTGAGTGTTGAGGCTGCTTATATCAATCAGAATTTCTCTCAGCAAGTGTTGATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCTAATGAGGGTGAGGAGGTTGCTTCGGTTGCGTATAGGTATAGAAGGTGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTGCATAGTGTTGTTGAATTGAATAAGCAAAGGTCATTCCTTACTGTGAATGCTTTGAATGAGTTTGATTCGAAGTATTCTGGTGTTGATTGGAGGCAGAAGTTGGAAACTCAAAGGGGTGCTGTTTTGGCTACTGAGCTCAAGAACAATGCTAACAAGTTGGCTAAGTGGACTGCACAAGCTCTTTTGGCTAGTGCTGATATGATGAAGTTGGGTTATGTGTCTAGGATTCATCCTCGAGACCATTTTAATCATGTTATCTTGGGCGTGGTTGGATATAAACCCAAGGACTTTGCTGCTCAAATTAATTTGAACACTACCAATATGTGGGGAATTGTTAAGTCTATTGTGGACTTGTGTATGAAATTGAATGAGGGGAAATATGTTATTGTGAAGGATCCATCTAAGCCTCAGATTAGGATCTATGAGGTTCCGGCTGATGCGTTTGAGAACGACTATGTGGAGGAGCCACTTCCGGAGGATGAACAAATAAGCCGGTTGATGCTCAAGTTTAAAAGGGTTATTGGATTGTTAACGATCCCTCAATTTGGAACAGAACTACGCTCAGACTCATTCATTTCTCCACTGCTATTTGTTGTCCCAGATTTTGCCATTTAA 1740 0.4397 MVGVAFDVGAVPFNPDGWGPMDSTTAANNNNNLPLNVPFAPFNRSDKLGRIADWTRNFNNQNRTRNPADSAFDFTLDDSFPASADDDNTFRLVDGKPPPRPKFGPKWRYQQQRQLPQRRDEEVEAKKREAEKDRARRDRIYHQNRSNPHNTRREAAVCKSSVEIQPEWNMHDQIPFSTFTKLSYNVPEPEDLLMCGALEYYDRTVDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCASRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVVELNKQRSFLTVNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVIVKDPSKPQIRIYEVPADAFENDYVEEPLPEDEQISRLMLKFKRVIGLLTIPQFGTELRSDSFISPLLFVVPDFAI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00474 579 PIRSF Transl_init_eIF3d 1 543 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre3g00474 579 MobiDBLite consensus disorder prediction 85 154 - -
Trre3g00474 579 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 529 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre3g00474 579 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 8 517 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre3g00474 579 Coils Coil 118 138 - -
Trre3g00474 579 MobiDBLite consensus disorder prediction 113 149 - -
Trre3g00474 579 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 537 IPR007783 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00474 Trre-Chr3 3161899 3165022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00474 1 538 Eukaryotic Initiation Factors Gene Family AT4G20980 76.512 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00474 K03251 - gmx:100799613 944.11