Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00473 ATGGAGAACAACCCTAGTTCATCAAGAGTTGACAAAAAAATCATTGAGAAGAATAGAAGAATTCAAATGAAAGATCTCCACAACAAGCTCAACTCACTTCTGCCCCATCAAACCTCAAAGGAAGCAATTTCAATGCCGGATAAGCTAGAGGAAGCAACAAACTACATAAAGAAATTACAGATCAACTTGGAGAAAATGAAGGAAAAGAAGAATTTTCTATTAGGAATTCAAAGGTCAACAAATGTGAATATGGATAGGACCAAGAAATTAGGATTAAAATCACCAAAAATTGAGATCCAACAATTTGGTTTAGTCTTAGAGATTGTTATAATAACATGTTTGGATTATCAGTTTTTGTTCAATGAAACAATTCGTGTTCTTCATGAAGAAGGAGTTGATATTGTGAATGCAAGTTCTAAAGTCAATGAAGATTCTGTTTTCCATTCAATACATTGTCAGGTAGGAGAATTTAGTAATGAAGCTGCAAGGATATCTGAGAAATTGAAGAAGTTTATTCTTGATTATTAG 528 0.3258 MENNPSSSRVDKKIIEKNRRIQMKDLHNKLNSLLPHQTSKEAISMPDKLEEATNYIKKLQINLEKMKEKKNFLLGIQRSTNVNMDRTKKLGLKSPKIEIQQFGLVLEIVIITCLDYQFLFNETIRVLHEEGVDIVNASSKVNEDSVFHSIHCQVGEFSNEAARISEKLKKFILDY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00473 175 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 171 - -
Trre3g00473 175 Gene3D - 1 90 IPR036638 GO:0046983
Trre3g00473 175 FunFam Transcription factor bHLH162 1 86 - -
Trre3g00473 175 Coils Coil 49 76 - -
Trre3g00473 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Trre3g00473 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Trre3g00473 175 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00473 Trre-Chr3 3156166 3157140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00473 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.778 9.78e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g00473 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00473 - - gmx:100784418 235.728