Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00472 ATGATGGAGGAAAATACTACTAGTTCGTGGTTAAGAAGGGCGAAATTCTCGCAAACAGTGTGTCATCGTTTAGATACATCTAGTTTGAATGCTACTCCGATCCGTGTTCAATTGGAAGAAATTTCGAAACCTTCTTCGAATATTAAGAAAAATCTTTTAACCAACAAGCAGAGATCTTTGTCGCCATTGCCCAGAACTTTTGTTAATGATGTCTTTAAGGAAGCTAGACATGAAGCGAAGAGGTTCTCGACACCAGGTCCTAGGAGGGATAACAAGAGGATTATGGGAAAGGTGTCGAATAATGATACTCGGGGACCATTACCCAAGGTATCGAGTTCGAAATCACTTTTGAACAGTCCGAATCAGCAAAGGGTGATGTCTAAGAACATGAGCAAGGATGGTTCGTGGAGTAAGTATCTTGAAAATGGTAGTGGCGGTGGTGGAAAGGTTACTGCTTTGGAAACAGCTGAAGAATGGACTATTGACATGTCTAAGCTGTTTCTTGGCCATAAGTTCGCTCATGGCGCTCATAGTAGGCTGTATCATGGTGTATATAAGGATGAGTCTGTAGCTGTTAAAATCATTAGGGCACCCGACGATGATGAAGATGAAGAATTGACTTCTAAATTAGAGAATCAGTTCATTAGAGAGGTCACCCTTTTATCTCGTCTCCACCATCGAAATGTTATAAAGTTCATAGCTGCAAGCAAAAACCCGCCGGTTTATTGTATTATCACAGAATATCTAGCTGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCAGAAAACTATTCCTCTCGAGAAGCTAATAGCCTTTGCTCTCGACATTGCTCGTGGAATGGCATATATACACTCTCAAGGTGTCATTCATAGAGATCTTAAACCAGAGAATGTCCTTATTGATGAAGATTTTCACCTTAAACTTGCTGATTTCGGCATTGCTTGTGAGGAGTCGGTCTGCGACTTATTGGCGGATGATCCCGGCACCTACCGGTGGATGGCACCTGAAATGATCAAGCGAAAATCCTATGGGAGAAAGGTTGATGTCTACGGTTTTGGGCTTATGTTATGGGAAATGTTGACAGGAAATATTCCATACATGGAAATGAATCCAATGCAAGCTGCTTTTGCAGTTGTGAATAAGAAATTAAGGCCAACTATTCCTCCAGACTGCCCACCTGCAATGCGAGCTTTAATCGAGCAATGTTGGGCGTTACAACCAGATAAGAGGCCTGATTTCTGGCAAATCGTGAAGGTGTTGGAGCAATTTCAATCTTCTATTGACCGTGATGGAACCCTGACTCTGGTGCAGAACCCTCGTTGCCAAGATCAAAAGAAAGGACTTCTTCATTGGATTCAAAAGCTTGGTCCTGTTCAAAATAGTGGCCCTAAGCCTAAACCAAAGTTCACATGA 1419 0.4221 MMEENTTSSWLRRAKFSQTVCHRLDTSSLNATPIRVQLEEISKPSSNIKKNLLTNKQRSLSPLPRTFVNDVFKEARHEAKRFSTPGPRRDNKRIMGKVSNNDTRGPLPKVSSSKSLLNSPNQQRVMSKNMSKDGSWSKYLENGSGGGGKVTALETAEEWTIDMSKLFLGHKFAHGAHSRLYHGVYKDESVAVKIIRAPDDDEDEELTSKLENQFIREVTLLSRLHHRNVIKFIAASKNPPVYCIITEYLAEGSLRAYLHKLEQKTIPLEKLIAFALDIARGMAYIHSQGVIHRDLKPENVLIDEDFHLKLADFGIACEESVCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYGFGLMLWEMLTGNIPYMEMNPMQAAFAVVNKKLRPTIPPDCPPAMRALIEQCWALQPDKRPDFWQIVKVLEQFQSSIDRDGTLTLVQNPRCQDQKKGLLHWIQKLGPVQNSGPKPKPKFT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00472 472 MobiDBLite consensus disorder prediction 79 140 - -
Trre3g00472 472 MobiDBLite consensus disorder prediction 104 138 - -
Trre3g00472 472 Gene3D Phosphorylase Kinase; domain 1 154 249 - -
Trre3g00472 472 SMART serkin_6 166 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00472 472 Gene3D Transferase(Phosphotransferase) domain 1 250 455 - -
Trre3g00472 472 ProSiteProfiles Protein kinase domain profile. 136 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00472 472 FunFam Serine/threonine-protein kinase isoform 1 156 250 - -
Trre3g00472 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Trre3g00472 472 PRINTS Tyrosine kinase catalytic domain signature 284 302 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 PRINTS Tyrosine kinase catalytic domain signature 330 340 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 PRINTS Tyrosine kinase catalytic domain signature 393 415 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 PRINTS Tyrosine kinase catalytic domain signature 246 259 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 PRINTS Tyrosine kinase catalytic domain signature 349 371 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 CDD STKc_MAP3K-like 173 422 - -
Trre3g00472 472 FunFam serine/threonine-protein kinase HT1 251 444 - -
Trre3g00472 472 Pfam Protein tyrosine and serine/threonine kinase 168 422 IPR001245 GO:0004672|GO:0006468
Trre3g00472 472 SUPERFAMILY Protein kinase-like (PK-like) 153 422 IPR011009 -
Trre3g00472 472 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 112 426 - -
Trre3g00472 472 MobiDBLite consensus disorder prediction 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00472 Trre-Chr3 3150441 3153395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00472 2 472 MAP Kinase Kinase Kinase AT5G58950 53.690 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre3g00472 PK_Tyr_Ser-Thr 1.9e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00472 - - tpra:123908135 882.863