Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00468 ATGATCAGACACAAAAACTCTCACCATCTTCTTCATCTTCTATCAACAATTTTCTCCCTTCTTTTCAACTCAATCTCCACCATTGATTTCATCTTCAACGGATTCAACTCATCAAACGTGATTCTCTTTGGCAATGCTACAATTGATTCTCAAATTCTAACACTTACACATGACCAATCTTTCTCTATTGGTCGTGCTCTTTACCCTAAAAAAATTCCCACAAAAAACTCTTCTTTTGTATACCCTTTTTCCACTTCCTTCATCTTTTCAATGGCACCTTTTGAAGACACTCTTCCTGGTCATGGCTTAGTTTTCATCTTCACACCTATTAAAGGAATCCAAGGTACAAGTTCAGCTCAACATCTTGGTCTTTTTAATCTTACCAATAATGGAAATTCCAACAACCATGTTTTTGGTGTTGAATTTGATGTTTTCATGAATCAAGAATTTGATGACATTAATGATAACCATGTTGGAATTGACATAAATTCTCTCAAGTCTTATGTTTCACATGATGTTGGGTTTTGGTCTGATGATGAAAAAAGTGAAAAAGATAAGATTTTTAAGAAATTGAAGTTGAATAATGGTGAAAATTATCAAGTTTGGATTGATTATGAAGATTCTTTGATTAATGTTACATTAGCAAAATTGGGTATGAAAAAACCTATTAGACCATTGTTGAATGTTTCTCTCAATTTATCTGATGTTTTTGAAGATGAAATGTTTGTTGGATTTACTAGCTCAACAGGACAATTAGTTGAAAGTCACAAAATTTTAGGTTGGAGTTTTAGCAATACAAATTTTTCATTGAGTGATGAACTTATTACTATTGGATTACCCTCTTTTGTTCTTCCAAAAGATTCAATTTTTAAGTCCAAAGGGTTTGTAGCAGGATTTAGTGTAATAGTTTTCTTTATTGTTTGTGTTTTGGTTTTGTTGGTAATGTTTTTGATTCAAAAGAAGAGAAAGAGAGAAAAGAAGAGAAGTGAAATGGAAGATTGGGAGTTAGAGTATTGGCCACATAGAATGTCATATGAAGAAATAGAAGCTTCCACAAAGAAGTTCTCTGAGGAAAATGTGATTGGAATTGGTGGGAATGGAAAAGTCTACAAAGGTGTTTTAAGAGGAGGAGTTATGATTGCTGTGAAAAACATTTCTCATGAGAATGATGGTTTGAGAGAATTTCTTGCAGAAGTTTCAACTCTTGGAAGGTTAAAGCAAAGGAATTTAGTAGGGTTACGAGGTTGGTGCAAGAAAAATGCTGGAAATTTCTTATTAGTTTATGATTATATGGAAAATGGAAGTTTAGACAAAAGGGTTTTTGATTGTGATGAGAGCAAGATGTTAAACTATGAAGATAGAATAAGGATTGTTAAGGAAGTGGCTTATGCTGTTTTGTATTTACATGAAGGGTGGGAAGTAAAAGTTGTGCATAGAGACATTAAGGCTAGCAATGTTTTACTTGATAAGGATATGAATGCAAAGTTAGGTGATTTTGGTTTAGCTAGAATGCAAAATCATGGTCAAATTTCTAGCACAACAAAGTTAGTCGGAACGGTCGGTTACATGGCTCCTGAAGTGATCAAAACCGGTAGAGCTTCGACTCATACCGATGTTTACATGTTCGGTATCTTGATTTTAGAGGTTATGTGTGGAAGGAGACCATTAGAAGAAGGTAAGGAACCTTTGGTTGAGTTTGTTTGGAAATTCATGGTACAAGGGGAACTTGTGAGTGCACTTGATGAGAGGTTAAGGGCTAAAGGTGAATTTAGTTTGCAAGAAATGGAGAGAGTGTTACACTTAGGGTTGTTGTGTGCATATCCTGAACCAAAATCTAGGCCAACAATGAGACAAATTGTGAATATTTTAGAAGGGAAGAATGAGGGAGTTGAAGAGTCAGAGATTGAGAATATGGATAGTTATTTGCTTCAACAGTTAAAATCAAGGGATATATTGGCTGGATATTCTCATTATTTTAGCTATGCATCACACCCAACTTTTCAAGATATTCGTCAATTATCGCCAACATCTTTCACTTGGTCCGGATCTATAGTTGAGGGTAGGTGA 2067 0.3454 MIRHKNSHHLLHLLSTIFSLLFNSISTIDFIFNGFNSSNVILFGNATIDSQILTLTHDQSFSIGRALYPKKIPTKNSSFVYPFSTSFIFSMAPFEDTLPGHGLVFIFTPIKGIQGTSSAQHLGLFNLTNNGNSNNHVFGVEFDVFMNQEFDDINDNHVGIDINSLKSYVSHDVGFWSDDEKSEKDKIFKKLKLNNGENYQVWIDYEDSLINVTLAKLGMKKPIRPLLNVSLNLSDVFEDEMFVGFTSSTGQLVESHKILGWSFSNTNFSLSDELITIGLPSFVLPKDSIFKSKGFVAGFSVIVFFIVCVLVLLVMFLIQKKRKREKKRSEMEDWELEYWPHRMSYEEIEASTKKFSEENVIGIGGNGKVYKGVLRGGVMIAVKNISHENDGLREFLAEVSTLGRLKQRNLVGLRGWCKKNAGNFLLVYDYMENGSLDKRVFDCDESKMLNYEDRIRIVKEVAYAVLYLHEGWEVKVVHRDIKASNVLLDKDMNAKLGDFGLARMQNHGQISSTTKLVGTVGYMAPEVIKTGRASTHTDVYMFGILILEVMCGRRPLEEGKEPLVEFVWKFMVQGELVSALDERLRAKGEFSLQEMERVLHLGLLCAYPEPKSRPTMRQIVNILEGKNEGVEESEIENMDSYLLQQLKSRDILAGYSHYFSYASHPTFQDIRQLSPTSFTWSGSIVEGR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00468 688 PANTHER - 44 627 - -
Trre3g00468 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Trre3g00468 688 Coils Coil 317 337 - -
Trre3g00468 688 Pfam Protein kinase domain 356 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00468 688 CDD lectin_legume_LecRK_Arcelin_ConA 28 266 IPR001220 GO:0030246
Trre3g00468 688 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Trre3g00468 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 273 IPR013320 -
Trre3g00468 688 FunFam L-type lectin-domain containing receptor kinase S.4 431 636 - -
Trre3g00468 688 ProSiteProfiles Protein kinase domain profile. 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00468 688 Gene3D - 26 273 - -
Trre3g00468 688 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 317 430 - -
Trre3g00468 688 Gene3D Phosphorylase Kinase; domain 1 315 430 - -
Trre3g00468 688 Gene3D Transferase(Phosphotransferase) domain 1 431 648 - -
Trre3g00468 688 SMART serkin_6 355 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00468 688 SUPERFAMILY Protein kinase-like (PK-like) 330 624 IPR011009 -
Trre3g00468 688 Pfam Legume lectin domain 28 267 IPR001220 GO:0030246
Trre3g00468 688 FunFam L-type lectin-domain containing receptor kinase S.4 26 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00468 Trre-Chr3 3102901 3104967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00468 23 571 Receptor kinase-like Gene Family AT4G04960 66.007 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre3g00468 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00468 - - gmx:100804391 1126.31