Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00456 ATGGCACTTCAACATTGTTTTTCACATGAATTGAAAACCATTCCAAATTCCATGTCAGAAGCAGCAAATTCCAATGGTTGTTTTGATTGCAACATCTGTTTAGACTTTGCGCACGAGCCGGTAGTCACCCTTTGTGGCCACCTTTACTGCTGGCATTGCATCTACAAGTGGCTTCATGTACAGAGTGATGATTCTCTTGGAGTCGACGAACACCCACAATGCCCTGTATGCAAAGATGATATATCACATACCACAATGATCCCATTGTATGGCCGCGGCGGCCATGCTCCACCGAGTGTGAAATCATCACATTGTGATGAAAGTTTTATACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAAAAGTATCTCAAAGCGACCAGCAGCAGCGGCTTCCATACCGTAATCCTTATCGGGGTCAACATTTAAACTCTTCTTTGTACCAACAAGATGATGATGGCACATCACAAATGCATAATCTTCGTGCCTCCATGACCTCAGGATCTCACCACCATCCTTTGGTCGGGATGTTTGGGGAGATGGTTTTTGCCGGAGTGTTTGGCAACTCGCCGAATTCTTATCAGCAGGCAGGAAGTAATAGCTCTAGATTAAGAAGGGAAGAGTTGCAGACTGATAAATTTTTGAACAGAATTACAAATTTTCTGTTTTGCTGCTTTCTCTTGTGTCTTATCGTCTTCTGA 711 0.4388 MALQHCFSHELKTIPNSMSEAANSNGCFDCNICLDFAHEPVVTLCGHLYCWHCIYKWLHVQSDDSLGVDEHPQCPVCKDDISHTTMIPLYGRGGHAPPSVKSSHCDESFIPPRPTASGAQALLAKVSQSDQQQRLPYRNPYRGQHLNSSLYQQDDDGTSQMHNLRASMTSGSHHHPLVGMFGEMVFAGVFGNSPNSYQQAGSNSSRLRREELQTDKFLNRITNFLFCCFLLCLIVF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00456 236 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Trre3g00456 236 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Trre3g00456 236 SUPERFAMILY RING/U-box 27 90 - -
Trre3g00456 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre3g00456 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 91 IPR013083 -
Trre3g00456 236 SMART ring_2 30 77 IPR001841 -
Trre3g00456 236 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 130 - -
Trre3g00456 236 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00456 Trre-Chr3 3008004 3008714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00456 22 222 C3H Transcription Factor Family AT4G27470 40.488 3.38e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00456 K10666 - gmx:100816864 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00456 3 3008004 3008714 Trre3g00456 3 3008004 3008714 ECH