Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00447 ATGGGTTTAAGCTCTAAGCAAGTTTCTAGTAGAAGTGTTGATTGGAATCAAACCTTGTTGCAAGATCAAAATTTGGAGCTACCAAAAACTCATCCTATGAAGAAAAATCAACAAACTCAACAATCAGAAGTTGTGAATTGTCCAAGATGTGATTCTACTAATACCAAATTTTGTTACTACAACAACTATAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGGGGTGTAAGAAAGAATAAGAAAGTCAAAAAATCAACCTCTCCAATTTCTATTAGCACCTCCACAAAAACTACTATTAGCACCACCACAACTTCTATTAACACCCCAACCACCTCAAATGGTGACATGAAAAATCAAACTTCACAGCAAAAACAGAATCAAAAAAACATATCTTCATCTATATATGATCAATCTGTTATTCATCCACCATCTTTTTTGCCACCTCAGAATCTGATGAGTACTAAAGATCAATCAGAAGGTAATAATAATAATAATGAAGAGTTTGGTATTGGTAATGGTATGTTTTTGAGTTCATCTATGCCTTTTACTCAAAACCAAAGCCTTATATTTCCATTTTCAAACTCGAGCTCTTTGAGGTTATCTAATGGATATAACTATGGTGAAGAGTTTAAAATAATGGAAGAGTCAACTATTAACAACAGTGTAATGCCATTGCCAAGTACTAGTGGCAGTGGCACTGTTACACAGCCATGGGAGGAGATACCAGCAGCAAGCACTGGCATGGATATGTCAAGTTATTGGAGTTGGGAGGATATTGATTCTTTGGTATCAACTGATCTTAATGTTCCTTGGGATGATTCCGATATCAAACCCTGA 888 0.3581 MGLSSKQVSSRSVDWNQTLLQDQNLELPKTHPMKKNQQTQQSEVVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKKVKKSTSPISISTSTKTTISTTTTSINTPTTSNGDMKNQTSQQKQNQKNISSSIYDQSVIHPPSFLPPQNLMSTKDQSEGNNNNNEEFGIGNGMFLSSSMPFTQNQSLIFPFSNSSSLRLSNGYNYGEEFKIMEESTINNSVMPLPSTSGSGTVTQPWEEIPAASTGMDMSSYWSWEDIDSLVSTDLNVPWDDSDIKP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00447 295 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Trre3g00447 295 MobiDBLite consensus disorder prediction 102 186 - -
Trre3g00447 295 Pfam Dof domain, zinc finger 43 98 IPR003851 GO:0003677|GO:0006355
Trre3g00447 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 208 IPR045174 GO:0003700|GO:0006355
Trre3g00447 295 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Trre3g00447 295 MobiDBLite consensus disorder prediction 95 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00447 Trre-Chr3 2968682 2969569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00447 45 101 C2C2-Dof Transcription Factor Family AT1G28310 79.310 3.52e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre3g00447 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00447 - - gmx:100806358 327.791