Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00439 ATGAGGTGTGGTTGCTTTAGAAGATTGTCTAACAAGAAGGAAAAACGTCCTTCTAATAATTATATTTCTAGTGAAATTGAAGGATATCCTTCGGATAATATTAAGCATTTTTCTGATAAAGAATTGTGTTTGGCAACTGCTAATTATCATTTAAGCAATAAGATAGGAAGGGGAGGTTTTGGAACTGTTTTCCAGGGAACATTAAAAGATGGAAGAAAGGTAGCAGTGAAGCCACTTTCAGTTGGATCAAAGCAAGGAGTTCGCGAATTTTTAACCGAAATTAATACCTTATCATACGTTAAACACGAAAACCTTGTTGAATTGGTTGGATTCTGCGTTCAAGGACCTAATCGTACAGTCGTCTATGAGTATGTCGAAAATGGCAACCTTCATACTGCATTACTTGGAAAAAAGAAATCAAATATCAAACTAGAGTGGACAAAACGATCTGCTATTTGCGTCGGTACTGCTAAAGGACTTGCGTATCTTCATGAAGAACTTCCACAACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTTGATAAAGACTTTAATCCCAAAATAGGTGATTTTGGTATGGCCAAATTATTTCCAGATGATATCACTCACATCAGCACAAGAATCGCAGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGACAATTAACTAAGAAAGCTGATGTATACAGCTTTGGAGTTCTCTTACTTGAAATAATAAGTGGCAAAAGCAGCTCAAGAACAAATTGGGAAGGATCACAAAAATCACTCTTAGAATGGGCATGGTATCTTCATGAAGAGGAGAAATGGTTGGAGCTAGTAGATAAAGACATGGAAGAATTTTCTGAGAAAGATGTAATCAAGTACATTAAGGTTGCTCTTTTCTGCACACAAGCAGCAGCAAAAAGAAGGCCATTGATGACTCAAGTGGTTGATATGCTCACTAAGGATATTCAGCTCAATGAGAAACAATTAACAGCACCAGGATTGTTCAATACTGATCTTGGAGAATCTTCTCAAAAGAAATCAAACCCTGAATCTTTAGTTTATCACACTAGTTCTACTGAGGCTCTGGCTAGTATTACCGAGGTCACGGCCAGGTGA 1119 0.3718 MRCGCFRRLSNKKEKRPSNNYISSEIEGYPSDNIKHFSDKELCLATANYHLSNKIGRGGFGTVFQGTLKDGRKVAVKPLSVGSKQGVREFLTEINTLSYVKHENLVELVGFCVQGPNRTVVYEYVENGNLHTALLGKKKSNIKLEWTKRSAICVGTAKGLAYLHEELPQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLLLEIISGKSSSRTNWEGSQKSLLEWAWYLHEEEKWLELVDKDMEEFSEKDVIKYIKVALFCTQAAAKRRPLMTQVVDMLTKDIQLNEKQLTAPGLFNTDLGESSQKKSNPESLVYHTSSTEALASITEVTAR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00439 372 Gene3D Phosphorylase Kinase; domain 1 21 124 - -
Trre3g00439 372 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 331 - -
Trre3g00439 372 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 25 124 - -
Trre3g00439 372 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 347 - -
Trre3g00439 372 SMART serkin_6 49 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00439 372 Pfam Protein tyrosine and serine/threonine kinase 50 319 IPR001245 GO:0004672|GO:0006468
Trre3g00439 372 ProSiteProfiles Protein kinase domain profile. 49 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00439 372 MobiDBLite consensus disorder prediction 336 355 - -
Trre3g00439 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre3g00439 372 CDD STKc_IRAK 55 321 - -
Trre3g00439 372 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trre3g00439 372 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Trre3g00439 372 SUPERFAMILY Protein kinase-like (PK-like) 22 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00439 Trre-Chr3 2918102 2920460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00439 37 334 Receptor kinase-like Gene Family AT1G56120 52.013 5.01e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00439 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00439 - - mtr:11430773 645.195