Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00430 ATGTCTGACATCGAAAATCACGCTAATCATGCTGCTTCTTCTCCCGACAAGCCAAGTTCCCGGGGTTCTGGTCATGAGAGCACAAGGATGAGAAGGAGAGATGGAGACAGGAGAACTTTTCATGACCACCGTGGTGGTGACCGTCACAGAGATAATAAGTATGAAGGTTTTAAAGGAAGAGACAAATATGACAGTTATAATCGTCAACGTGGTCGTGATTATGATAGGCATAATGACTATGATCGAGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACTTCTGGTTTTGACATGGCACCACCTGCTACAGGTGTAACACCCACCGTTTCAGGGCAAATGCCAGGGATTGCTCATATGATTCAAGGAGCTACCCAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACTAATGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCATTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGTGCAAATGGTGGATCCGAGGGACTTGATCGCATATTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGACGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGCGAAGAAAGCCCTACTAAAGTTTTATGTTTATCTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCAAGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTATTCTTGGAATACTCTGACTGTGCTGCTTCTTTGGCTGCAAAAAATGCTTTAAATGGTAGAAAATTTGGGGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1575 0.4273 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRRTFHDHRGGDRHRDNKYEGFKGRDKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGANGGSEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEDDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLSEAVTTEQLTDNGEYEEILEDMQDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCAASLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00430 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 368 IPR000504 GO:0003723
Trre3g00430 524 SUPERFAMILY RNA-binding domain, RBD 298 515 IPR035979 GO:0003676
Trre3g00430 524 Gene3D - 418 523 IPR012677 -
Trre3g00430 524 SUPERFAMILY RNA-binding domain, RBD 79 248 IPR035979 GO:0003676
Trre3g00430 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 260 IPR000504 GO:0003723
Trre3g00430 524 Gene3D - 286 393 IPR012677 -
Trre3g00430 524 CDD RRM3_U2AF65 422 510 - -
Trre3g00430 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Trre3g00430 524 MobiDBLite consensus disorder prediction 1 135 - -
Trre3g00430 524 FunFam U2 snRNP auxiliary factor large subunit 419 523 - -
Trre3g00430 524 CDD RRM2_U2AF65 297 373 - -
Trre3g00430 524 MobiDBLite consensus disorder prediction 22 90 - -
Trre3g00430 524 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00430 524 FunFam U2 snRNP auxiliary factor large subunit 175 273 - -
Trre3g00430 524 PANTHER RNA-BINDING PROTEIN 19 522 - -
Trre3g00430 524 CDD RRM1_U2AF65 179 258 - -
Trre3g00430 524 Gene3D - 175 270 IPR012677 -
Trre3g00430 524 FunFam U2 snRNP auxiliary factor large subunit 274 386 - -
Trre3g00430 524 SMART rrm1_1 424 510 IPR000504 GO:0003723
Trre3g00430 524 SMART rrm1_1 298 371 IPR000504 GO:0003723
Trre3g00430 524 SMART rrm1_1 181 256 IPR000504 GO:0003723
Trre3g00430 524 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 522 IPR006529 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00430 Trre-Chr3 2854285 2861088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00430 299 503 Eukaryotic Initiation Factors Gene Family AT1G22760 25.366 4.11e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00430 K12837 - vvi:100243034 626.32