Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00429 ATGTCTGACATCGAAAATCACGCTAATCATGCTGCTTCTTCTCCCGACAAGCCAAGTTCCCGGGGTTCTGGTCATGAGAGCACAAGGATGAGAAGGAGAGATGGAGACAGGAGAACTTTTCATGACCACCGTGGTGGTGACCGTCACAGAGATAATAAGTATGAAGGTTTTAAAGGAAGAGACAAATATGACAGTTATAATCGTCAACGTGGTCGTGATTATGATAGGCATAATGACTATGATCGAGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACTTCTGGTTTTGACATGGCACCACCTGCTACAGGTGTAACACCCACCGTTTCAGGGCAAATGCCAGGGATTGCTCATATGATTCAAGGAGCTACCCAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACTAATGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCATTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGTGCAAATGGTGGATCCGAGGGACTTGATCGCATATTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGACGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGCGAAGAAAGCCCTACTAAAGTTTTATGTTTATCTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCAAGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTATTCTTGGAATACTCTGACTGTGCTGCTTCTTTGGCTGCAAAAAATGCTTTAAATGGTAGAAAATTTGGGGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1584 0.4268 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRRTFHDHRGGDRHRDNKYEGFKGRDKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGANGGSEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEDDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLSEAVTTEQLTDNGEYEEILEDMQDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCAASLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00429 527 SMART rrm1_1 301 374 IPR000504 GO:0003723
Trre3g00429 527 SMART rrm1_1 181 259 IPR000504 GO:0003723
Trre3g00429 527 SMART rrm1_1 427 513 IPR000504 GO:0003723
Trre3g00429 527 CDD RRM3_U2AF65 425 513 - -
Trre3g00429 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 263 IPR000504 GO:0003723
Trre3g00429 527 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 525 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre3g00429 527 CDD RRM2_U2AF65 300 376 - -
Trre3g00429 527 PANTHER RNA-BINDING PROTEIN 19 525 - -
Trre3g00429 527 Gene3D - 421 526 IPR012677 -
Trre3g00429 527 MobiDBLite consensus disorder prediction 1 135 - -
Trre3g00429 527 FunFam U2 snRNP auxiliary factor large subunit 277 389 - -
Trre3g00429 527 SUPERFAMILY RNA-binding domain, RBD 301 518 IPR035979 GO:0003676
Trre3g00429 527 MobiDBLite consensus disorder prediction 22 90 - -
Trre3g00429 527 SUPERFAMILY RNA-binding domain, RBD 79 260 IPR035979 GO:0003676
Trre3g00429 527 Gene3D - 289 396 IPR012677 -
Trre3g00429 527 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00429 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 378 IPR000504 GO:0003723
Trre3g00429 527 FunFam U2 snRNP auxiliary factor large subunit 422 526 - -
Trre3g00429 527 FunFam U2 snRNP auxiliary factor large subunit 175 276 - -
Trre3g00429 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 371 IPR000504 GO:0003723
Trre3g00429 527 CDD RRM1_U2AF65 179 261 - -
Trre3g00429 527 Gene3D - 175 273 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00429 Trre-Chr3 2854285 2861088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00429 302 506 Eukaryotic Initiation Factors Gene Family AT1G22760 25.366 4.52e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00429 K12837 - vvi:100243034 636.336