Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00428 ATGTCTGACATCGAAAATCACGCTAATCATGCTGCTTCTTCTCCCGACAAGCCAAGTTCCCGGGGTTCTGGTCATGAGAGCACAAGGATGAGAAGGAGAGATGGAGACAGGAGAACTTTTCATGACCACCGTGGTGGTGACCGTCACAGAGATAATAAGTATGAAGGTTTTAAAGGAAGAGACAAATATGACAGTTATAATCGTCAACGTGGTCGTGATTATGATAGGCATAATGACTATGATCGAGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACTTCTGGTTTTGACATGGCACCACCTGCTACAGGTGTAACACCCACCGTTTCAGTTAATAATGCAGGGCAAATGCCAGGGATTGCTCATATGATTCAAGGAGCTACCCAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACTAATGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCATTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGTGCAAATGGTGGATCCGAGGGACTTGATCGCATATTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGACGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGCGAAGAAAGCCCTACTAAAGTTTTATGTTTATCTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCAAGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTATTCTTGGAATACTCTGACTGTGCTGCTTCTTTGGCTGCAAAAAATGCTTTAAATGGTAGAAAATTTGGGGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1596 0.4254 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRRTFHDHRGGDRHRDNKYEGFKGRDKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSVNNAGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGANGGSEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEDDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLSEAVTTEQLTDNGEYEEILEDMQDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCAASLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00428 531 SUPERFAMILY RNA-binding domain, RBD 79 264 IPR035979 GO:0003676
Trre3g00428 531 CDD RRM3_U2AF65 429 517 - -
Trre3g00428 531 SMART rrm1_1 305 378 IPR000504 GO:0003723
Trre3g00428 531 SMART rrm1_1 431 517 IPR000504 GO:0003723
Trre3g00428 531 SMART rrm1_1 185 263 IPR000504 GO:0003723
Trre3g00428 531 FunFam U2 snRNP auxiliary factor large subunit 281 393 - -
Trre3g00428 531 Gene3D - 179 277 IPR012677 -
Trre3g00428 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Trre3g00428 531 SUPERFAMILY RNA-binding domain, RBD 305 522 IPR035979 GO:0003676
Trre3g00428 531 CDD RRM2_U2AF65 304 380 - -
Trre3g00428 531 Gene3D - 293 400 IPR012677 -
Trre3g00428 531 Gene3D - 425 530 IPR012677 -
Trre3g00428 531 FunFam U2 snRNP auxiliary factor large subunit 179 280 - -
Trre3g00428 531 MobiDBLite consensus disorder prediction 22 90 - -
Trre3g00428 531 FunFam U2 snRNP auxiliary factor large subunit 426 530 - -
Trre3g00428 531 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00428 531 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 529 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre3g00428 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 375 IPR000504 GO:0003723
Trre3g00428 531 CDD RRM1_U2AF65 183 265 - -
Trre3g00428 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 267 IPR000504 GO:0003723
Trre3g00428 531 PANTHER RNA-BINDING PROTEIN 19 529 - -
Trre3g00428 531 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00428 Trre-Chr3 2854285 2861088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00428 306 510 Eukaryotic Initiation Factors Gene Family AT1G22760 25.366 4.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00428 K12837 - vvi:100243034 635.95