Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00423 ATGTACATAAACAGTGGTTCTTCTTCCATGGGAAGATCTTTCAAGGAATCTCTTAAAATACTTGAAGCTGATATTCATCATGCCAATACCTTGGCATCAGATTTTCCGAGGGAATATGACGGTGCGTGTCTTCAGATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTTTTTCTGGTTCAATGGACAGATTGCAATCTTGCTGGAGCCCTTGGACTATTAAGAATACTAATTTACAAGGTGTATGTGGATGGAACAACTACCATGTCTACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCGTCTTTATTACAACTTGAAAAAGGTGTCACTGATGTGGAGGATAAAAAACAGAAGGCTGTATGCATGGAGAGGTATCGTAAAAGAGATGACGAGGACAACAAACAATCCTCGGACGTAGACATTGAAAGAGAAGAAGAGTGTGGTATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAATTGCTACCATGCCATGTGCCTAAAATGTTACAATGAATGGGGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCGGGCGATCTCTGGGTATTCACCGATAGTAGGGACATAGTAGACATGGAAACAGTGACAAGGGAGAATCTTAGAAGACTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCAGACTCCCTTTTTGACCCTTATGACTCTCACTTAAGATAA 756 0.4034 MYINSGSSSMGRSFKESLKILEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDVEDKKQKAVCMERYRKRDDEDNKQSSDVDIEREEECGICMEMNSKIVLPNCYHAMCLKCYNEWGARSQSCPFCRDSLKRVNSGDLWVFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00423 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 217 IPR013083 -
Trre3g00423 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Trre3g00423 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Trre3g00423 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Trre3g00423 251 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Trre3g00423 251 SMART ring_2 155 192 IPR001841 -
Trre3g00423 251 SUPERFAMILY RING/U-box 144 197 - -
Trre3g00423 251 FunFam RING/U-box superfamily protein 133 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00423 Trre-Chr3 2825226 2828096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00423 154 233 C3H Transcription Factor Family AT2G20030 32.184 1.83e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00423 K25840 - vvi:100244841 460.685