Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00410 ATGGCGAATGATGGATATCAATTATCACTGTTTGGTGACGATGGAGATGAATCTGATGATGAAAAACTTGCAATGGATATCGAATCGTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCCGAGAGTAGTCACGAGGATTCTTCACTGAAAGACGTTTCACCTGGAGAATCTGGGATCCATGATAGTTTTTTTCTTCAAAATGGGAGTTCTGTGCTTGACTCTGAACATGAAAACCAGGGACCTTCATCACAGACCTGCTCTTCTCCAAATGCTTTTGCTGGTGGCTACATGGACTCGTTATCTGTTTTTGAAAATGATGAAACATGCTATGCAGAAAGGGCAGGAGTTTCTGAACATGAGATGTCTTCTTATAGTGCGGACACAAATTTCGCCGAGGCAAATTCAAATACTGCAACTGTTTGTCGAGATAATTTGAACTTGAGCCTGTGGAAGGGTTACAATAATAGCCAAATCAAGCATGCGGGAGATGATATAGAATCTGAACATGCTTCACACAGCTCTATCGTAGAGAATGTTGATGGACCTTTGGAAGATTATGAAACAGCGTTGAAAGAAATTATTGGAGTTCCTAGGCAGCAGGAAAATGACTCATGTACATCTTTTGAAATGCCATATGTGGATGTTAACAGGCCTACATATTTTGGAACTTCAACTGATTCTACTATTTGTCAAGGTTCGGATGTTCGTAGTGATTACAGTGGCTACTATCAATCTTTGGATTGTTACCAGGGTCAAGATGTTAGACCTGTTGTTACTGACAGTTCTGGTTATTTGCCTAATGGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGACGATGGGGAATATGAAGGTTGAGAAAATGGAGTTCTTAACTGACACTACAAATATGATTGGCGGCATGCATTTGAGCTCTATTGGTCGGATCCCTTTTCAGGATAGTCAATTTATGCCAGCAGAGAGTGATTATCCTTCATTTTTTCCTGGCGACGTTGTATTTGAAGACAGTGAATCAGTGCAACGATCATCTTGTGCTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGTCATGCCTTACCAAAATACTTTCCAGAATAACAATGCTGAGTTAAATGCTGGTCTAGAGGTGAAACAATTACCCAGTATTTTCCCTACCAATGGATGTCAGAATTATGATTTTTTCAGGAGTGAGGATAGGGCTACTATCGTAAAAACTGAGAATGCCAATTATTATCAAGATCTTGTCAATAAAACTGCTAATAAATTTCCAGGAAACATTGGAAATTTGAATTCCAGATCCTTAAACCAATCTATATCTGTTGCCCGGGCATCGATTACCAACGGGAAGCGGTACAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGTATTGATTCTCAACTTTCCAAAAGAAGTAACGAGGGATCCAACGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCAACAAGTCGATTTTCCGAACTCGAGAATTCCCTTAATATGTCCCAATCTTCTAAATTTGATTATACCCAAACTTATATGACAGGAGGCACAAGACCAAAGGCATGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCTACCAGAGGGACTTCTGGCAGTTCCTCTCTTACGTCACCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACGATTGCTTTAATACTAAAGGAAATGCCTCGATTGCTTAAGACGTGCAATAATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTGCCTGAGAATGGTGTAGTGAAGATGGAATCTAATGTCTGTCAATCCGATAGAAATGCACTCACAAGTGGGAATGTGTCGTTGCATGCAAAGGGTAGACCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGATGAGCTGCATAATAAGGTAACCAGCAAAGCAAATATCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGAGAAAAAGGAATTTATGAAGATCATGCCGTGCCAAGTAAGAAAAGGAAATGCCCTACTAGTTCTAAAAGCAGCAAGAAGGCTTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGCCGATGGTGCTTGTCAGGGACTCCAATCCAGAATTCCATTGATGATCTCTACAGTTACTTTAGATTTCTGAGATATGATCCGTATGCCGTGTACACATCATTCTGTTCTACGATCAAGATGCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACAGTTGTTTCTTTTAAAATGTTTAGAGGCTTCCCTGGCCCTCTGCGGTATCTGTAATGACGCTCCTGAAGAAGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAACCAGTGTCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCCGTGTTTCCTAGAGCCACACTGAACAGTTCTTTATCAGGTTCTGTGGTTGAGGATTCTGAACCTTGTTCTCAGAGTCAACCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGCAGTCGTTGTCTAAGCCACAATGCCATAATTCCCAAAAAAAATCTGTGCAGAGCACTTCTAGGGATAGTACTGATTGCAGCTCCACTTCTGCCGATAATAGTGATGTTCCCGAAAAGAAAACGGTGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAATCTTGTCTTAAGAATTCTTCAATTCAGTACAGAAGACTTGATGGAACAATGTCTGTCATGTCAAGAGATAAAGCTGTTAAAGATTTTAACACACTACCCGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCTTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCTACAACGGAAGATCAGGCGATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGACCGTATTTTAGCTTTGCAGCAAAAAAAGCGACAGATGGTTGCATCTGCATTTGGAGAGGATGGAAATGGTGATCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3912 0.4141 MANDGYQLSLFGDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESGIHDSFFLQNGSSVLDSEHENQGPSSQTCSSPNAFAGGYMDSLSVFENDETCYAERAGVSEHEMSSYSADTNFAEANSNTATVCRDNLNLSLWKGYNNSQIKHAGDDIESEHASHSSIVENVDGPLEDYETALKEIIGVPRQQENDSCTSFEMPYVDVNRPTYFGTSTDSTICQGSDVRSDYSGYYQSLDCYQGQDVRPVVTDSSGYLPNGVCPEFWKNEETMGNMKVEKMEFLTDTTNMIGGMHLSSIGRIPFQDSQFMPAESDYPSFFPGDVVFEDSESVQRSSCAPYISSEGQSFNVKAEGDEMVMPYQNTFQNNNAELNAGLEVKQLPSIFPTNGCQNYDFFRSEDRATIVKTENANYYQDLVNKTANKFPGNIGNLNSRSLNQSISVARASITNGKRYNCGMSELESKPSIDSQLSKRSNEGSNDEDDCDVCIIEDISHPAPTSRFSELENSLNMSQSSKFDYTQTYMTGGTRPKACDEQYILRVALQDLSQPKSEVSLPEGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPRLLKTCNNAQKSVLETLDLDDDPLPENGVVKMESNVCQSDRNALTSGNVSLHAKGRPSAGTLVVCPTSVLRQWADELHNKVTSKANISVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKGIYEDHAVPSKKRKCPTSSKSSKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKMPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPRATLNSSLSGSVVEDSEPCSQSQPCDSSKIKAALEVLQSLSKPQCHNSQKKSVQSTSRDSTDCSSTSADNSDVPEKKTVFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLESCLKNSSIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGNGDRQSRLTVDDLKYLFMM 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00410 1303 SMART ring_2 1004 1042 IPR001841 -
Trre3g00410 1303 Gene3D - 541 635 IPR038718 -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 748 773 - -
Trre3g00410 1303 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 770 900 - -
Trre3g00410 1303 Pfam Zinc finger, C3HC4 type (RING finger) 1004 1040 - -
Trre3g00410 1303 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 427 1302 - -
Trre3g00410 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 888 IPR027417 -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 464 489 - -
Trre3g00410 1303 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 660 748 - -
Trre3g00410 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1302 IPR027417 -
Trre3g00410 1303 SUPERFAMILY RING/U-box 1001 1061 - -
Trre3g00410 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 997 1054 IPR013083 -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 37 56 - -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 464 481 - -
Trre3g00410 1303 Pfam Helicase conserved C-terminal domain 1148 1245 IPR001650 -
Trre3g00410 1303 CDD SF2_C_SNF 1148 1255 - -
Trre3g00410 1303 SMART ultradead3 567 867 IPR014001 -
Trre3g00410 1303 CDD DEXDc_SHPRH-like 571 888 - -
Trre3g00410 1303 ProSiteProfiles Zinc finger RING-type profile. 1004 1043 IPR001841 -
Trre3g00410 1303 Gene3D - 661 901 IPR038718 -
Trre3g00410 1303 ProSitePatterns Zinc finger RING-type signature. 1019 1028 IPR017907 -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 1100 1131 - -
Trre3g00410 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 850 IPR014001 -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00410 1303 MobiDBLite consensus disorder prediction 1100 1128 - -
Trre3g00410 1303 SMART helicmild6 1162 1245 IPR001650 -
Trre3g00410 1303 Pfam SNF2-related domain 591 965 IPR000330 GO:0005524|GO:0140658
Trre3g00410 1303 MobiDBLite consensus disorder prediction 748 764 - -
Trre3g00410 1303 Gene3D - 1055 1302 IPR027417 -
Trre3g00410 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1298 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00410 Trre-Chr3 2740402 2749036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00410 494 1302 RAD5 or RAD16-like Gene Family AT1G61140 63.373 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre3g00410 SNF2_N 3.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00410 - - gmx:100805307 1737.62