Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00402 ATGGGGTTTTTGAATTTGGATTTGCATGTTCAAATCTTTGTCACTACTATGATCGTGATTCTCATGGGAACTCTCTGTGTTGCTGACACTGACCCTGTTGATGTTGCTGCAATCAATAGTCTATATGTTGCTATGCACTCACCACCTCTTCAAGGGTGGAAGCCTGTGGGAGGAGATCCATGTTTCGACCATTGGCAAGGTGTGGATTGTGTCTTCTCCAACATAACCGCCATACGACTAGCAGGCTTGAATTTGGGTGGAGAGCTTGGCAGTAATTTGGATTTCCCATCCATTATAGACATTGATCTTAGCAACAACCACATTGGAGGTTCCATTCCATTCACTTTACCGCCTACTTTGAGGACCATGTCTCTGTCAGGAAATCGGTTAAATGGAAGCATTCCAGATGCGTTATCCTTATTAACTCAATTGTCAAACTTGGATTTGGCCGATAACAACTTGACCGGTCAGCTGCCTTCCTCAATGGGGAGTTTATCGTCTCTTACAACATTACTGTTGCAGAACAATCACCTTGTAGGGACCCTTTTTGTTTTGCAGGACCTTCCTCTTCAGGATTTGGATATAGAGAATAATTTATTCTCTGGGCCAATTCCTCCAAATTTGTTGAGCATCGCTAATTTCAGAAAAGATGGGAATCCATTTAATACTACTATTATTCCATCTCCACCTGTCGCTGTTGCTGCAGCCCCTTTGCCTGCAGCTATTGGTCGATCCCCCGAAGAATCACCTTGGAATGTGGCATATAGTCCTTCTTCTGACTTCACAGCACCGATGCCTGGAAATGTTAAGAAGTCTTTCCTAGCTAAGTATGCCATTTGGATTGTCGGTGCCGGTTTATTAATATTTATCGTTATAGGAATTTGTATTTTTATGGCGTGTTGCTGTAAGAAAGAGTCAAAAAATAAAAATTCTCAGAACCTTGATGTGGAGGGCTTTCCACAAACTTTGCATAAACCTACTCGTAACGACACTGTTTTTGAAGCAACAAATCAAGATGGAAAAGCTGAGAAAACACCGCGGTTAAACGAAGTGCCGAATAGAAGAACAAATTTGATTCCAAAGGTTCAGGATGAACAAGAAGTATATCTCAACAAGCTCAACACAGTATCTTCAACTTCAGAAAACAATAATGGTTCCAAACCTCCATTCCTGCAGCCGCCACCACATTCTCTGCCAATCATTCCTGGTGAGAAAGTCATCGTCAATCCAGCTGCAACTACAAAAACCGAAAGACAAGCTATGACTAGTTCAGTCAAAATGTATACTGTTGCATCACTTCAGCAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTTGGATCTGTTTATAGGGCCGAGCTCCCTGATGGAAAGCTGTTGGCAGTGAAGAAACTGGATGCTACGGCTTTCAAGGACCAGAATGATGAACAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATTCAGCATGCCAATATCGCAAAGCTTGTGGGCTACTGTACTGAGTATAACCAACGATTACTTATATACGAGTATTGCAATAATGGAACCCTTTATGACGCACTTCATGGTGATGACGAGCATTGTATTAAATTTCCATGGAATGCACGCATTAAGGTCGCACTTGGAGCTGCAAGGGCTTTAGAGTATCTGCATGAAAACTTTCGGCCGCCTATTGTTCACCGAAATTTTAGATCTGTTAATGTTCTCCTGAATGAAAAGTCGGAAGTGTGTGTCTCTGATTGTGGATTAGGTCACTTGCTATCTTCTGGCACTGTTGGTCAGTTATCTGGCCGCCTCCTTACAGCTCATGGTTACAGCGCTCCAGAATTTGAGTTGGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTCGGAGTCGTAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCTATTCCTCAACTTCATGACATCGATGCATTGTCAAAAATGGTTGATCCTCGCTTAAATGGATCATATTCTATGAAGTCGTTGTCACGCTTTGCAGATATTGTTTCTTCATGTATTCAGCGTGAACCCGAATTCCGGCCAGCTATGTCGGAAATTGTTCAGGATCTCTTGTTAACAATGTAG 2157 0.4214 MGFLNLDLHVQIFVTTMIVILMGTLCVADTDPVDVAAINSLYVAMHSPPLQGWKPVGGDPCFDHWQGVDCVFSNITAIRLAGLNLGGELGSNLDFPSIIDIDLSNNHIGGSIPFTLPPTLRTMSLSGNRLNGSIPDALSLLTQLSNLDLADNNLTGQLPSSMGSLSSLTTLLLQNNHLVGTLFVLQDLPLQDLDIENNLFSGPIPPNLLSIANFRKDGNPFNTTIIPSPPVAVAAAPLPAAIGRSPEESPWNVAYSPSSDFTAPMPGNVKKSFLAKYAIWIVGAGLLIFIVIGICIFMACCCKKESKNKNSQNLDVEGFPQTLHKPTRNDTVFEATNQDGKAEKTPRLNEVPNRRTNLIPKVQDEQEVYLNKLNTVSSTSENNNGSKPPFLQPPPHSLPIIPGEKVIVNPAATTKTERQAMTSSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDATAFKDQNDEQFLQLVSSISKIQHANIAKLVGYCTEYNQRLLIYEYCNNGTLYDALHGDDEHCIKFPWNARIKVALGAARALEYLHENFRPPIVHRNFRSVNVLLNEKSEVCVSDCGLGHLLSSGTVGQLSGRLLTAHGYSAPEFELGSYTQQSDVFSFGVVMLELLTGRKSYDRSRPRGEQFLVRWAIPQLHDIDALSKMVDPRLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00402 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 407 517 - -
Trre3g00402 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 714 IPR046959 -
Trre3g00402 718 ProSiteProfiles Protein kinase domain profile. 440 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00402 718 Pfam Protein tyrosine and serine/threonine kinase 443 714 IPR001245 GO:0004672|GO:0006468
Trre3g00402 718 Gene3D Transferase(Phosphotransferase) domain 1 518 716 - -
Trre3g00402 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 518 718 - -
Trre3g00402 718 MobiDBLite consensus disorder prediction 311 330 - -
Trre3g00402 718 MobiDBLite consensus disorder prediction 377 397 - -
Trre3g00402 718 SUPERFAMILY L domain-like 32 213 - -
Trre3g00402 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 149 - -
Trre3g00402 718 MobiDBLite consensus disorder prediction 312 330 - -
Trre3g00402 718 SUPERFAMILY Protein kinase-like (PK-like) 420 715 IPR011009 -
Trre3g00402 718 Gene3D Ribonuclease Inhibitor 35 230 IPR032675 -
Trre3g00402 718 Gene3D Phosphorylase Kinase; domain 1 404 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00402 Trre-Chr3 2669105 2674120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00402 20 715 Strubbelig Receptor Gene Family AT4G03390 49.933 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre3g00402 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00402 - - gmx:100793423 1005.74