Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00400 ATGGGGACGGAGGTGATAGGTAGATGGGGGACATGGGAGGAGCTCCTCCTTGGTGGGGCGGTTCTCCGCCACGGGACTCGTGACTGGAACGTCGTTGCCGCTGAGCTCCGAGCACGAACCGTATGTCCTTACACTTTTACCCCTGAGGTCTGTAAAGCCAAGTATGAAGACTTGCAACAACGGTATTCTGGAAGCAGGGCTTGGTTTGAGGAGCTTAAGAAAACAAGAGTGGCAGAGCTGAAGAACGCTTTGGAGCGATCTGAAGATTCTATTGGGTCTCTTGAATCGAAGCTCGAAGTCCTCAAGGCTGAGAAGAATGAGAAAAACGATATGTGTGAAAATGGCCTAGAAAGTCCGGTATCAAATGTACCTTCCAAGAAATTGAAGATATTAGAGAGAGTTGAATCTTCCACTAAAGAGACATCAAAGGACGGGCTATCTGCCGGAAGTTTCACACACGAAACGAGGACAAACTGGTCTCCTGAATCTCAGGTTCCAGCTAGGTCTGCCAATGATAATGAGACTAAGCCGGAAGTTTCACAATCTACTGAGCAGGCTAAAATTTCGAACCTAGATAATTTGGCACTTGCTTTATATGAAGGACAATTAGGATGTTGTAAAAAACGGAGAGGGAAGAGAAAAAGGAAGGATTGTAGTAGAAGAAATATTAAGGAAGCAGCTAGTGTAGGAGAAAGTGACTTATTAGATTCAGCTGATGTTGTTTCTTGGTGTAAAGAAAGTTCTACTAGTAACTGTGGTGAAGTTGCCAAATCTTCTGTTGATGTAGATGATCAGAAAAATAAGAATTCGAAAAAGCCTGGCGCGGAAGATATGGTTAAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCATCTGCCTTCCGTCGAAGACTTGATGGTCAGAAAAGAGGAAGGTACAAGAAAACGATACGGCGGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACCAAACAATTAAATCAACCGTAGAACTATTCCGAGACTTGTTGCTACTCACCAACAACGCCTTAGTCTTTTACTCGAAGAACACTCGCGAATATAAAACTGCTCTCCTTCTAAGAGAAATGGTCACCAAAAAAATGAGGGAGAGTTTCAAGGATAGTAATAGTATTGTTAGTAGCAGCAAAATCACCGAACCTAACGAGGATATGAAATTACCGGTGCATAATCTTCATGTGAAACCAAGAAGTGTAAGACCAGGTAACAGAAAAATCATTGCAAAGGCCGGTGGTGGCAATAACTCTGCATCTGGGACATCACAAGGAACTAAGAAGCCGATTAAAGCTGATTCTTCGCCTTCCGTGGAATCCTTAAATGTCACGAAAAAAACTTTTGGCAGACCGAAAAGAGTTGAATGTGTGACTTCAGATCAAAAGGCTTCAACACCAACAAAAGGAAAGAAAAGAGTTAGAACAAAGTCCTAG 1452 0.4242 MGTEVIGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVCPYTFTPEVCKAKYEDLQQRYSGSRAWFEELKKTRVAELKNALERSEDSIGSLESKLEVLKAEKNEKNDMCENGLESPVSNVPSKKLKILERVESSTKETSKDGLSAGSFTHETRTNWSPESQVPARSANDNETKPEVSQSTEQAKISNLDNLALALYEGQLGCCKKRRGKRKRKDCSRRNIKEAASVGESDLLDSADVVSWCKESSTSNCGEVAKSSVDVDDQKNKNSKKPGAEDMVKILDSIFETKGASAFRRRLDGQKRGRYKKTIRRHMDFDTIRSRISNQTIKSTVELFRDLLLLTNNALVFYSKNTREYKTALLLREMVTKKMRESFKDSNSIVSSSKITEPNEDMKLPVHNLHVKPRSVRPGNRKIIAKAGGGNNSASGTSQGTKKPIKADSSPSVESLNVTKKTFGRPKRVECVTSDQKASTPTKGKKRVRTKS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00400 483 Gene3D - 261 377 IPR036427 GO:0005515
Trre3g00400 483 Pfam Bromodomain 279 359 IPR001487 GO:0005515
Trre3g00400 483 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 8 441 - -
Trre3g00400 483 MobiDBLite consensus disorder prediction 141 186 - -
Trre3g00400 483 MobiDBLite consensus disorder prediction 109 128 - -
Trre3g00400 483 ProSiteProfiles Bromodomain profile. 286 356 IPR001487 GO:0005515
Trre3g00400 483 MobiDBLite consensus disorder prediction 421 450 - -
Trre3g00400 483 MobiDBLite consensus disorder prediction 134 186 - -
Trre3g00400 483 MobiDBLite consensus disorder prediction 404 483 - -
Trre3g00400 483 Coils Coil 77 111 - -
Trre3g00400 483 CDD Bromodomain 276 370 - -
Trre3g00400 483 SMART bromo_6 271 375 IPR001487 GO:0005515
Trre3g00400 483 SUPERFAMILY Bromodomain 272 377 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00400 Trre-Chr3 2629808 2635207 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g00400 Bromodomain 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00400 - - gmx:100793951 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03656 7 44258516 44261821 Trre3g00400 3 2629808 2635207 PCT