LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00393	ATGAAGTACAATCCACGAGTCTCCAGCAGCCGCCGCAAGAGCCGCAAGGCTCATTTCACGGCACCGTCAAGTGTCCGCCGTGTTCTAATGAGCGCACCTCTTTCCGCCGATCTCCGATCCAAATACAACGTCCGTTCAATGCCAGTTCGCAAAGACGATGAAGTTCAGGTTGTTCGTGGTCTCTACAAAGGTCGTGAAGGAAAGGTTACTCAAGTTTACCGTCGCAAATGGGTGATTCACATTGAACGTATCACAAGAGAGAAGGTTAATGGATCTACTGTTAATGTTGGTGTTAATCCTTCCAAGGTTGTTATCACTAAGCTCAGACTTGATAAGGATAGGAAATCGCTTCTTGATAGGAAGGCTAAGGGTCGTGCTGCTGCTGATAAGGAGAAGGGAACCAAGTTTGCTACTGAGGATATTATGCAGAATGTTGATTAG	441	0.4649	MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRSKYNVRSMPVRKDDEVQVVRGLYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGVNPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFATEDIMQNVD	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00393	146	FunFam	60S ribosomal protein L26	1	144	-	-
	Trre3g00393	146	SUPERFAMILY	Translation proteins SH3-like domain	8	125	IPR008991	-
	Trre3g00393	146	CDD	KOW_RPL26	52	105	IPR041988	GO:0003723
	Trre3g00393	146	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre3g00393	146	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	8	121	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre3g00393	146	Gene3D	-	1	144	IPR014722	-
	Trre3g00393	146	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	141	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre3g00393	146	NCBIfam	50S ribosomal protein L24	8	122	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre3g00393	146	Pfam	KOW motif	51	82	IPR005824	-
	Trre3g00393	146	ProSitePatterns	Ribosomal protein L24 signature.	52	69	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Trre3g00393	146	SMART	kow_9	48	75	IPR005824	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00393	Trre-Chr3	2574743	2575183	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g00393	1	146	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	86.986	9.40e-94	266

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00393	K02898		-	csav:115713026	236.884