Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00386 ATGAATGACTTATTCTCAAGCTCCTTCAAGAAATATAGTGACTTGAAGGAGCAATCTCACAATGATGTAGAAGCAGGAAAAGAAAGTATCAACCTTGATAAATTCTTTGAAGATGTTGAGAATGTGAAAGAAGATATGAGGCTAGTTGAAAAGCTATATAGAAAATTGCAAGAGTCTAATGAAGAAAGCAAAATTGTCCATAATGCTAAAACAATGAAAGATCTTAGAGCAAGGATGGATAAAGATGTTGAACAGGTTCTGAAAAGAGTTAAAATCATAAAAGGTAAGCTTGAAGCATTAGAACGTTCGAATGCGGCGAATAGAAATATTCCGGGATGTGGTCCAGGTTCATCAGCAGATAGAACAAGAACTTCTGTGGTTAGTGGTTTGGGAAAAAAACTCAAAGATATGATGGATGATTTTCAAGGATTAAGAGCTAGAATGCAACAAGAATATAAGGAAACAATTGAAAGAAGGTATTTTACAATAACAGGTGAAAAAGCTGATGAAGATACTATTGAGAATTTAATATCAAGTGGAGAAAGTGAAACTTTTATGCAAAGGGCAATTCAAGAACAAGGTAGAGGTCAAATTATGGACACAATATCTGAGATACAAGAAAGACATGATGCTGTTAAGGAAATAGAGAAAAACTTGATTGAGTTACATCAAGTTTTTTTGGACATGGCAGCACTTGTTGAATCACAAGGACAACAATTGAATAATATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTTAGAAGAGGAACAGAACAACTTCATGAGGCAAGAGAACATCAAAAGGATTCAAGGAAATGGACTTGTTATGCTATACTTCTTGGTATTGTCCTAATCATTGTGATTTTATTTCCATTCTTGATGTCACTTCTACCTCATTTGATACTGAGGTAG 915 0.3421 MNDLFSSSFKKYSDLKEQSHNDVEAGKESINLDKFFEDVENVKEDMRLVEKLYRKLQESNEESKIVHNAKTMKDLRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIENLISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREHQKDSRKWTCYAILLGIVLIIVILFPFLMSLLPHLILR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00386 304 FunFam Syntaxin 132 195 295 - -
Trre3g00386 304 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Trre3g00386 304 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre3g00386 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Trre3g00386 304 Pfam SNARE domain 239 290 IPR000727 -
Trre3g00386 304 SMART SynN_4 27 153 IPR006011 GO:0016020
Trre3g00386 304 PANTHER SYNTAXIN 42 288 IPR045242 -
Trre3g00386 304 CDD SynN 32 189 IPR006011 GO:0016020
Trre3g00386 304 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Trre3g00386 304 SMART tSNARE_6 197 264 IPR000727 -
Trre3g00386 304 Coils Coil 83 103 - -
Trre3g00386 304 Gene3D - 32 159 - -
Trre3g00386 304 CDD SNARE_syntaxin1-like 201 261 - -
Trre3g00386 304 Gene3D - 191 294 - -
Trre3g00386 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Trre3g00386 304 Coils Coil 39 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00386 Trre-Chr3 2520622 2521536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00386 1 303 SNARE and Associated Proteins AT1G61290 77.632 3.76e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00386 K08486 - gmx:100818999 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03682 7 44677464 44678384 Trre3g00386 3 2520622 2521536 PCT