Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00385 ATGAACTCTACTCCATCATCTTCTTCCTCCAAACTATGCTTCAATTCCGACTGCAAAGACTTCAAGTCTGATAGACCTAAGAAAGGTTGGAGACTACGTACTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGAATTCATTGTGGGTGTATTGTTTCAAGTAACACCTTTGTGTTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAACTTGCCGTGGCCACAATCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCAGCTTCTTCTTCAGACCAGCCTCCAGATGTGCACTCTCTTGGTGAATTATCAAATAATTTTGACAAAATTTATGGCAATGAAAGATTAACCACCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGATTATCAGCTAATTGGAATGCCAAACTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAATGAGGACAAACCGGGTTCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTGAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCACAACAAACTCCTCATCCTGGCAAACAATTTAGTGGCACTGTCCATTTAGCTCTCGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAATTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAGACATTGAGTGCAAGTGATGCTGGGCGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCCGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCTATGCCAGCTGATCAGGATAATGAAGCTAGTAAGACTGGAAACGGACTTTCTGCACATGAAGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCACTGGGGAGCAAACCTTTAATATCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATGGAAAATGAGGATATAATAGAACTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTAGTGATTGAAGGCTTCGAGTTTGAGGAATATGAGGATGCTCCGTTGCTTGGGAAGCCAACTATTTTCACTACTGATGATATGGGTGAAAGGATTCAGTGGTCTCAATGTGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCTTGTGCGCTTCTTCCATCAAAATGGACGTGTTTTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCCGCTGCACAAGAGCTTACTGCAGAACAACTTGAGAATTTGTTACCTCCTTGTAATTCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGAGGCTCTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGCCGCGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGCTGCAGCAACAGAATTCCCAGCAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAACAAGGAGGTTAATGACTGTTCTGACGATGATCCTCACCGGACAAAATCATCCGTGTCTCCGTTCAAAGGCCAAATTGACCTCAATATCCAGCCGGAGCGAGAAGAAGAGTTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAGCAGCAACAGCAACAGCAGCAGAAGACTGTGTTGAACTCTGGAACTGGAGATTCATCAGGTAGTCAGTCACAACAGGTAGGAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGGAGATAAGGAGCATATCCAGTCTTTGTCTATGAACGTGTGA 2658 0.4342 MNSTPSSSSSKLCFNSDCKDFKSDRPKKGWRLRTGDLAQLCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPDVHSLGELSNNFDKIYGNERLTTSSLEKKNEDLSGLSANWNAKLGSREMVLMNGLRNEDKPGSCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPHPGKQFSGTVHLALDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPADQDNEASKTGNGLSAHEVELTDPSSWSKVDKSGYIAKEALGSKPLISRKRKNNILGSKSKRLKMENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPLLGKPTIFTTDDMGERIQWSQCEDCLKWRKLPACALLPSKWTCFDNSWDPERSSCSAAQELTAEQLENLLPPCNSVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKLQQQNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEVNDCSDDDPHRTKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQQKTVLNSGTGDSSGSQSQQVGDVVREEKLSNGVIHGSSSHNGDKEHIQSLSMNV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00385 885 SUPERFAMILY DNA-binding pseudobarrel domain 333 436 IPR015300 -
Trre3g00385 885 MobiDBLite consensus disorder prediction 863 885 - -
Trre3g00385 885 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Trre3g00385 885 SMART B3_2 336 436 IPR003340 GO:0003677
Trre3g00385 885 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Trre3g00385 885 CDD B3_DNA 334 435 IPR003340 GO:0003677
Trre3g00385 885 MobiDBLite consensus disorder prediction 715 885 - -
Trre3g00385 885 MobiDBLite consensus disorder prediction 439 462 - -
Trre3g00385 885 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Trre3g00385 885 MobiDBLite consensus disorder prediction 716 731 - -
Trre3g00385 885 Gene3D - 314 440 IPR015300 -
Trre3g00385 885 Gene3D - 567 620 - -
Trre3g00385 885 ProSiteProfiles Zinc finger CW-type profile. 563 613 IPR011124 GO:0008270
Trre3g00385 885 MobiDBLite consensus disorder prediction 822 855 - -
Trre3g00385 885 Coils Coil 716 739 - -
Trre3g00385 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 833 - -
Trre3g00385 885 MobiDBLite consensus disorder prediction 732 768 - -
Trre3g00385 885 Pfam CW-type Zinc Finger 569 610 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00385 Trre-Chr3 2510529 2519330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00385 268 720 B3 DNA Binding Superfamily AT4G32010 54.978 4.34e-161 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g00385 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00385 K09287 - gmx:100807252 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00385 3 2510529 2519330 Trre3g00385 3 2510529 2519330 ECH