Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00376 ATGTCCAGTTTCGCTTTCTGCAAACGTCTTTCTAGAACTTTCTGTGACAATCGCAGAACCGTTAAACTCGTTCTCCTCTGCACCGCCGTTAGTGGTGGCGGTTATTTTGCTTATGGTGAGTTAGCACAATCGGAAGTGGTTACCGATAGGAAAAAAGTGGTGGTGCTAGGAACTGGATGGGCGGCAACAAGTTTTATGAAGAATCTGGATAGTCCGAAGTATGAAGTTCAGGTGGTTTCGCCTCGGAATTATTTTGCATTTACTCCTTTGTTGCCTAGCGTCACTTGCGGCACAGTTGAAGCGCGCAGTATTGTTGAACCTGTTCGTAATATTTTTAGGAAGAAAAAAGTGGATGTGCAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCTGAAAATAGGAAAGTTTATTGTCGATCTAATGCAAACAATAATTTGGGTGGGAAAGAAGAATTTGTTGTGGATTATGATTACCTAATCATCGGTGTGGGCGCTCAAGTCAACACATTTAACACACCAGGAGTGGTAGAGAATTGTCATTTTTTGAAGGAAGTTGAAGATGCCCAGAAGATTAGAAGAACAGTTATTGACTGTTTTGAGAGAGCAAATTTGCCTGAAGTTAGCGAGGAAGAAAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGCGGGCCAACTGGAGTAGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTAGTACATTTATATCCTGGGATAAAAGATTTAGTAAAAATTACACTTCTAGAAGCGGGAGATCATCTTTTGAGCATGTTTGACAAAAGGATCACTGCTTTTGCTGAAGATAAGTTTCAAAGAGATGGGATTGATGTGAAAACTGGATCCATGGTTGTGAAGGTAGATGACAAAGAAATTTCTACTAAAGAACTGAAAAATGGAGGAAAGGTTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACAAATTGGTCAGGCTAGCAGACGTGCTCTAGCTACTGATGAATGGTTGAGAGTCGAAGGATGCAACAACGTATATGCGCTCGGTGATTGTGCGACGATAAATCAGCGAAAAGTCATGGAAGATATTGGGGCGATCTTTAAGAAGGCTGACAAAGGCAATTCAGGAACACTTACAGTCAAAGAATTTCAAGCGGTCATGAATGACATTTGTGAACGATACCCTCAAGTTGAGCTGTATCTGAAGAATAAACAGATGCGCAACATTGCTGATTTATTGAAGGAAGCTAAGGGGGACGTCCAAAAAGAATCAATTGAACTGAATATCGAAGAACTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTCCCTGCTACAGCGCAGGTTGCCTCTCAGCAAGGAATTTACCTAGCCAAATGTTTTAACCGGATGGAAAAGTGTGAGGAAAAACCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGTCATCGCTTCAAACCCTTCAGGTACAAGCACTTAGGACAGTTTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGTCACAGCAGTCAATGGTTGTGGTATTCTGTATATGCAAGCAAGCAAGTTAGCTGGCGTACAAGGGCATTAGTGGTTACAGACTGGACAAGACGTTTTGTATTTGGAAGGGACTCAAGTCGCATCTGA 1731 0.42 MSSFAFCKRLSRTFCDNRRTVKLVLLCTAVSGGGYFAYGELAQSEVVTDRKKVVVLGTGWAATSFMKNLDSPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVDVQFSEAECFKIDAENRKVYCRSNANNNLGGKEEFVVDYDYLIIGVGAQVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPEVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVHLYPGIKDLVKITLLEAGDHLLSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVDDKEISTKELKNGGKVTTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIGAIFKKADKGNSGTLTVKEFQAVMNDICERYPQVELYLKNKQMRNIADLLKEAKGDVQKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGIYLAKCFNRMEKCEEKPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00376 576 Gene3D - 42 413 - -
Trre3g00376 576 Gene3D - 416 575 - -
Trre3g00376 576 SUPERFAMILY EF-hand 367 463 IPR011992 -
Trre3g00376 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 575 - -
Trre3g00376 576 SUPERFAMILY FAD/NAD(P)-binding domain 51 269 IPR036188 -
Trre3g00376 576 PANTHER NADH DEHYDROGENASE 48 576 IPR045024 GO:0003954|GO:0006116
Trre3g00376 576 Coils Coil 438 458 - -
Trre3g00376 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 41 403 - -
Trre3g00376 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 51 376 IPR023753 GO:0016491
Trre3g00376 576 SUPERFAMILY FAD/NAD(P)-binding domain 217 371 IPR036188 -
Trre3g00376 576 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00376 Trre-Chr3 2458141 2463159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00376 1 576 Chloroplast and Mitochondria Gene Families AT4G21490 72.384 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00376 K03885 - gmx:100802661 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03709 7 45059600 45063654 Trre3g00376 3 2458141 2463159 PCT