Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00373 ATGGGACGAACACCTTGTTGTGAGAAGAATAATGGTCTCAAGAAAGGACCATGGACAACTGAGGAGGATCAAAAACTCATTGATTACATTCAAAAACATGGTTATGGCAATTGGAGGACACTCCCAAAGAATGCTGGTTTGCAAAGATGTGGTAAAAGTTGTCGTCTACGTTGGACAAACTATCTCCGACCAGACATAAAACGAGGACGATTTTCATTTGAAGAGGAAGAGACTATAATTCAACTACATGGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGATTACCAGGAAGGACAGACAACGAAATAAAGAACTATTGGAACACACACATTAGAAAAAGGCTTTTGAGAATGGGAATTGATCCGGTGACACATAGTCCTCGACTTGACTTATTGGACCTCTCTTCTATTCTTTGTTCATCTCTCCATGGTTCATCAACATCATCTCAAATGAACAACTTCCAAAATCTCCTTAACATGCAACAACCTTTGGTCATGAATCCTGAGCTTCTAAAGTTAGCTTCATCACTCTTCACAACCTCATCACATCAACAAGATTATAGTAATAATCAAAACCAACCCTTCAATCCTCAAATACATAATCAAATTCCACTTTCACATTTTGGTGAATTTCAAGACCAAGTTCAACAAGTACCTAATTCTAATGCCAATGTTTGTACTACCACATTCACTACCCCTTGTGTTTCATCTTCATTGACTAATGAATCACAATTATTTGAACCCAAAGTTGAAGCATATACATCAAATTTCAATGACCTTGGTAATTACCAACAACATTTTGTTCATGATATTGAAAATTGGCATGAAAATGGGTTTGGTTTAAGTACCTTAAAAGAGGATTATGTCCCTCAATTATCAAGCCAAAATTATTATTATGGTTCTGATAATCAAAATTTCATGTATCAAAGTTCAAACCAAATTTTATCAACACCATCATCTAGTACTCCCACACCTTTGAATTCAAATTCCACGTGTATCCTTGGGAGCAATACAGAAGATGAGAGAGAAAGCTATGACAGTTGTAATAGGTTGAATTTTGAAATCCCTGCACATATTTTAGAGGCCAATGATTTCATGTAA 1107 0.3631 MGRTPCCEKNNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHGILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLHGSSTSSQMNNFQNLLNMQQPLVMNPELLKLASSLFTTSSHQQDYSNNQNQPFNPQIHNQIPLSHFGEFQDQVQQVPNSNANVCTTTFTTPCVSSSLTNESQLFEPKVEAYTSNFNDLGNYQQHFVHDIENWHENGFGLSTLKEDYVPQLSSQNYYYGSDNQNFMYQSSNQILSTPSSSTPTPLNSNSTCILGSNTEDERESYDSCNRLNFEIPAHILEANDFM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00373 368 Gene3D - 70 117 - -
Trre3g00373 368 SMART sant 14 64 IPR001005 -
Trre3g00373 368 SMART sant 67 115 IPR001005 -
Trre3g00373 368 MobiDBLite consensus disorder prediction 316 335 - -
Trre3g00373 368 Gene3D - 14 67 - -
Trre3g00373 368 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre3g00373 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre3g00373 368 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre3g00373 368 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre3g00373 368 FunFam Transcription factor MYB39 70 131 - -
Trre3g00373 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Trre3g00373 368 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre3g00373 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Trre3g00373 368 FunFam MYB-related transcription factor 14 67 - -
Trre3g00373 368 CDD SANT 70 113 IPR001005 -
Trre3g00373 368 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre3g00373 368 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00373 Trre-Chr3 2435104 2436450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00373 1 368 MYB Transcription Factor Family AT4G21440 51.813 8.40e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g00373 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00373 K09422 - gmx:778071 436.417