Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00370 ATGGGGAAAAAATCAACGACGGAGGAAGTCAAACTGGAAATTCCGCCGGATAATCTCCGGTGCACCCGCACCGACGGACGGCAATGGCGGTGCAAAAGAAGAGCAAAGGAAAACGTGAAATTATGCGAGGCTCATTATCTTCAAGGTAAAATTCGGCAGAACAAAGAGAAGGTACCGGAATCACTGAAGCTTCAAAGAAACATGAAGATGAAGAAGAGGAAGAAAACCGACGTCGTTGAAATTAGGTCAAAGAATAAAAAGAAGAAGAAGAATGGTGATATGCAATTGGAGTTGATAAGGATGGTGTTACAGAGAGAGGTTGATAAGAAGAAGAAGATGAACAACAACAACACAGTTGAAGAATTTGAATTGCAGCATTACAGTGAAGGAGAATTGAGAAAAGAATTACCCAATGGGGTTATGGAAATTGCTCCTCCTTCAACATCACATGATGTTGATTTTCACTGTAATGGTAAATCAATTCTTACACCACGTTACTTCAGGTCCAAGAATGTTGATAGAAGAGTCAATTTTGATCATTTGCAGGTTTTGAAGAAGGGGAAGAGGAAGAAGTGTCATTGGTGTCAGAGTAGTGATTCTTTGAATCTGATCAAGTGTTCTAACTGCCAGAATGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTCGAAACTCAAAATGATGTTAAGATGGCGTGTCCAGTTTGTCGAAGAACTTGCACATGTAAAGATTGTCGGGCAAGTCAGTGTAAGGACCGTGAAAGTAAGGATTATTTGGCTGGTACAAGTAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTTTGCTCCTTCCTGTACTGAAACAAATAAGCGAAGACCAGCATACAGAGCTCGAAACAGAAGCAAAAAATACAGGAAAAAATATTTCTGATATTCTCATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTGCTGCAACTATTGCAAAACACCCATTCTGAATCTTCACAGAAGTTGCTTTAGTTGTTCCTACAGCCTTTGCTTAAGATGTTGTCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATAAATTCTTCAACGTCCAACTTACCTGACAAAATGGACGATTGCGTTGCTGACGAAAGTTGCCTTTCGGATGATAAGACCATTTCTAGTGACAACGTAACTGATACTTCAATGCTACCGGATTGGACTGGTTGTATTGGTACTACTGACAGTGTATCATGCCCTCCAACAGAGCTAGGTGGTTGTGGTAATAGCCACCTTGACTTGAGATGTGTTTTTCCCTTAAGCTGGATCGAAGAATTGGAAGCTAAGGCGGAAGAAATAGTTTGCAGCTATGACGTTCCTGAAATGTTGGATAAAAATTCAAGTTGCTCACTTTGTATTGACAAAGATCATAAAACTAACAGATATAAGCAATCGAAGGAAGCTGCTCGAAGAGAAGATTCTGATGACAATTGCTTATTTTATCCCACAGTTTTCGACATCAGTTGTGATCATTTCGACCATTTTCAGAAGCACTGGGGTAAAGGCCATCCTGTACTAGTGCGAGACGTGCTCCGAAGTACAAAAACCCTCAGTTGGGATCCTCTGTCCATGTTCTGTGCTTATCTCGAGAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGGGAGGTAGAAATTAACATTAGACAGGATTTTACCGGGTCTCTTAAATGTCAACCTCGAAAAAATGATTGGCATGAGATGCTGAAACTAAATGGATGGCTATCTTCGCAACTATTCAAGGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCAATTCAAGAATACATGAATCCCAGATATGGTCTTCTGAATTTAGCTGCATATATGAAAGATGGGAGTGCAAAACACGACAAAGGTCCATATGTCTATATTTCTCATGGCTGCGCTGACAATGAAGCTTATTCTGTGCTAAATCTCTCTTATGAACCATATGATGTGGTTAATATTATGGCACATACCTCAGATGCTCCTCTCTCTGCGGAACATCTTACTAAGATAACCAAGTTATTGAAAAAGCACAGAAATCTGTGTCAAAGGGGGTCACCAAAGATTACTACCGAGCATGCAGAAGACATGGAACTAAAGGAACCAGAAAGTATTGCAAGGGAAGGAACTGACTTTCACAGGAGAGTCAATAGAACGTCTTACATCTCCACTGAAGTCAAAACAATAGCTAGTCGGAGTTTAGATAACAATACTTCCAGCAATGGAGAATGCCGTTCTGGTTCTGATACTGAAAAGGCGCAAAGCTTCTCGCCTTTCCAGAAGACAGTTCGGAGTACTGACATGTATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGTACCAAAGCTTCTAGAATACCTTAAAAGACACGCCGATGAATTTTCTTCTACCAATGAATATGGCAGTGAGAAGATGGTTCACCCAATTCTAGATCAGAGCATCTTTTTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTTGATATCGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTATGTCTCCTGAGAGTGTTGCCGAGTGTATCCAATTGACTGATGAGATCCATCTGCTTCCAGAAGATCATAAAGCAGAAGTAGACAAGCTAGAGGTGAAGAAAATGGCTCTTCATAGCGTGGAGACGGCAATAAAAGAAATACACGAGCTCACTTCCAATCCAAAACATGATTGA 2847 0.4039 MGKKSTTEEVKLEIPPDNLRCTRTDGRQWRCKRRAKENVKLCEAHYLQGKIRQNKEKVPESLKLQRNMKMKKRKKTDVVEIRSKNKKKKKNGDMQLELIRMVLQREVDKKKKMNNNNTVEEFELQHYSEGELRKELPNGVMEIAPPSTSHDVDFHCNGKSILTPRYFRSKNVDRRVNFDHLQVLKKGKRKKCHWCQSSDSLNLIKCSNCQNEFFCMDCIKQRYFETQNDVKMACPVCRRTCTCKDCRASQCKDRESKDYLAGTSRVDRILHFHYLVCLLLPVLKQISEDQHTELETEAKNTGKNISDILIKQVEFGCNEKNCCNYCKTPILNLHRSCFSCSYSLCLRCCQTLSQGSPFEHINSSTSNLPDKMDDCVADESCLSDDKTISSDNVTDTSMLPDWTGCIGTTDSVSCPPTELGGCGNSHLDLRCVFPLSWIEELEAKAEEIVCSYDVPEMLDKNSSCSLCIDKDHKTNRYKQSKEAARREDSDDNCLFYPTVFDISCDHFDHFQKHWGKGHPVLVRDVLRSTKTLSWDPLSMFCAYLERSITRYENNKDLLEACLDWWEVEINIRQDFTGSLKCQPRKNDWHEMLKLNGWLSSQLFKEQFPAHFAEVIGALPIQEYMNPRYGLLNLAAYMKDGSAKHDKGPYVYISHGCADNEAYSVLNLSYEPYDVVNIMAHTSDAPLSAEHLTKITKLLKKHRNLCQRGSPKITTEHAEDMELKEPESIAREGTDFHRRVNRTSYISTEVKTIASRSLDNNTSSNGECRSGSDTEKAQSFSPFQKTVRSTDMYSVAQWDVFRRQDVPKLLEYLKRHADEFSSTNEYGSEKMVHPILDQSIFLDTTHKMRLKEEFDIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFMSPESVAECIQLTDEIHLLPEDHKAEVDKLEVKKMALHSVETAIKEIHELTSNPKHD 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00370 948 Pfam WRC 16 57 IPR014977 -
Trre3g00370 948 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Trre3g00370 948 Gene3D Cupin 499 917 - -
Trre3g00370 948 ProSiteProfiles JmjC domain profile. 622 908 IPR003347 -
Trre3g00370 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 944 IPR045109 GO:0032454|GO:0033169
Trre3g00370 948 Pfam JmjC domain, hydroxylase 788 889 IPR003347 -
Trre3g00370 948 ProSiteProfiles Zinc finger RING-type profile. 192 238 IPR001841 -
Trre3g00370 948 MobiDBLite consensus disorder prediction 755 782 - -
Trre3g00370 948 SUPERFAMILY Clavaminate synthase-like 506 936 - -
Trre3g00370 948 SMART cupin_9 607 908 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00370 Trre-Chr3 2403978 2408930 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre3g00370 JmjC 1.2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00370 K15601 - gmx:100802129 1261.13