Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00363 ATGGAGAAGACAACGATCAACATTGAAGAAGGAGAGTCTTCAAATTCAAAAGACATATTGTTTGTTTGCGAAATCTGCATGAACACTAAAACAATGAGTGATGCTTTCCACATCAGCGGTTGCCATCACGCTTATTGCTCGGATTGCGTAGCCATGTACATCAGTTCCAAACTTGAAGAAAACATCACAAACATTGTGTGTCCTGTTCCTGGGTGCAGTGGTTCGTTAGAAGTGGACTTTTGCCGTTCAATTCTTCCAGCTGAGGTTTTTGAACGGTGGGGTAACGCGTTGTGTGAGATTTCAATCGATGTATCGCAGAAATTCTTTTGTCCTTTTGTAGACTGTTCTGCTCTTTTGATCAACGACGGAACGGAGACTGTTAAAAATTCTGAATGTCCTAATTGTAAAAGGATGTTTTGTGCACAATGTAAGGTTCCATGGCATAAAGGAATCAAATGTCGCAAGTTCCAGAAGCTGAACGCTGATGAGAGGGGGAGAGAAGATGTTATGTTGGTGAAACTTGCGAAGGATAATAAGTGGAGGCGATGTCCCAAATGCAGATTTTATGTTGCAAAATCCGAGGGTTGCCACCACATGACATGCAGGTGTGGCTGTAGATTTTGTTACAAATGTGGAGGTGCCTACGTTGCCGACAGTAACAGATGCAAATGTTATTTGGTAAAGCCCAATCAACAACAAGAAGAAATTCACTTTCACCCCGCTGTTGAATGTTTATGTGTTTTATTATTCATTCTCTTTATTTTTTCGCCACTACTACTACCATTACTATTCTGGTATATTGAATAA 807 0.4052 MEKTTINIEEGESSNSKDILFVCEICMNTKTMSDAFHISGCHHAYCSDCVAMYISSKLEENITNIVCPVPGCSGSLEVDFCRSILPAEVFERWGNALCEISIDVSQKFFCPFVDCSALLINDGTETVKNSECPNCKRMFCAQCKVPWHKGIKCRKFQKLNADERGREDVMLVKLAKDNKWRRCPKCRFYVAKSEGCHHMTCRCGCRFCYKCGGAYVADSNRCKCYLVKPNQQQEEIHFHPAVECLCVLLFILFIFSPLLLPLLFWYIE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00363 268 SUPERFAMILY RING/U-box 164 228 - -
Trre3g00363 268 FunFam RBR-type E3 ubiquitin transferase 19 104 - -
Trre3g00363 268 SUPERFAMILY RING/U-box 105 158 - -
Trre3g00363 268 Gene3D - 151 241 - -
Trre3g00363 268 CDD Rcat_RBR_unk 179 212 - -
Trre3g00363 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 106 IPR013083 -
Trre3g00363 268 Pfam IBR domain, a half RING-finger domain 173 219 IPR002867 GO:0008270
Trre3g00363 268 Pfam IBR domain, a half RING-finger domain 106 153 IPR002867 GO:0008270
Trre3g00363 268 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 238 IPR031127 GO:0004842|GO:0016567
Trre3g00363 268 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Trre3g00363 268 ProSiteProfiles Zinc finger RING-type profile. 23 69 IPR001841 -
Trre3g00363 268 SMART ibrneu5 91 153 IPR002867 GO:0008270
Trre3g00363 268 SMART ibrneu5 163 222 IPR002867 GO:0008270
Trre3g00363 268 SUPERFAMILY RING/U-box 20 101 - -
Trre3g00363 268 ProSiteProfiles TRIAD supradomain profile. 19 234 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00363 Trre-Chr3 2370214 2372499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00363 23 213 C3H Transcription Factor Family AT2G19610 30.348 5.19e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00363 K11975 - pvy:116125934 301.212