Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00360 ATGAAGAAAAAATGTGAACTATGCAAAAATCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGTCTTTGTTGGGAATGTGATGCAAAAGTTCATACTGCAAATTTCATAGTCACAAAACATCATAGGTTTCTTCTATGTCATATTTGTCAATCTCTAACACCTTGGCATGGCACTGGACCCAAGTTTGTTCCCACCATCTCACTTTGTAATCACTGTGTCTCTGTCTCCAACAATAACAATGGTCATCATGATCAAGATGATGATGATGATGATGATACTGAGGATGATGATGATGATGATGATGATGTTGATGATGGTGAAGATGAAGAAAATCAAGTTGTTCCATGGAAATCTACACCTCCACCACCAGTTTCTTCTAGTTCTTCAAATAGTGCAACTAGTACTACAAATTAG 417 0.3693 MKKKCELCKNPAKLFCESDQASLCWECDAKVHTANFIVTKHHRFLLCHICQSLTPWHGTGPKFVPTISLCNHCVSVSNNNNGHHDQDDDDDDDTEDDDDDDDDVDDGEDEENQVVPWKSTPPPPVSSSSSNSATSTTN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00360 138 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270
Trre3g00360 138 MobiDBLite consensus disorder prediction 124 138 - -
Trre3g00360 138 MobiDBLite consensus disorder prediction 86 110 - -
Trre3g00360 138 SMART bboxneu5 1 46 IPR000315 GO:0008270
Trre3g00360 138 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 135 - -
Trre3g00360 138 CDD Bbox1_BBX-like 4 46 - -
Trre3g00360 138 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Trre3g00360 138 MobiDBLite consensus disorder prediction 79 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00360 Trre-Chr3 2348928 2349344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00360 1 114 C2C2-CO-like Transcription Factor Family AT4G27310 46.491 1.69e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre3g00360 zf-B_box 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00360 - - cam:101492786 175.637