Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00353 ATGCAACGTTTCTTTCTCTTGGTCTTGTTCATCACTTCATTTTCTATTCTCATCACAATCTCAACCTCTACAGATACCTTAACCTCATCACAAGTTCTCACAACAAACCAGACCCTTGAATCATCCAATGGAACATTCGTTCTTGGTTTCTTCCCAGGAACAAATTCCAACATTTATTTAGCCATATGGTACAAAAACATTCAGCCCAGAACAGTTGTTTGGGTTGCAAACAGAGACAACCCTCTTCAAAATAATTCAACCAATGACGGGTTTCTCAAAATTGGAGACAATGGAAACATATTAATTCTCAATTCATTAACAGATTCCGACAACAACCTCGTTTGGTCTTCGAATCAAACAACAGTTACTAAAAACGAAGTTGTTCTTCAGCTTTTAGATAATGGAAATTTAGTTGTGAGAGAATCAAACGTGAATGACCCAACAAAATATCTATGGCAAAGCTTCAATTACCCAACAGATACTTTGTTACCATCCATGAGCATTGGTTGGAACTTCGACAAAAACACGGAAAAACACTTAACTTCATGGAAGATCACAGGTAAAGACCCTTCAACGGGAGATTATACATACAAAGTTGATTTTCATGGTTTACCACAAATTTTCCTATGGAATGGTGAAAATATTATATATCGAAGGAGACCTTGGAATGACGACATATCCGGAAATTTCGAGTTCTCATGGAACAAACACGGCATAAACTACCGGTTTTCAAACGAAAATGCATCAATTTTTTCCCGACTCGTTGTGAATTCGGTTGGTGAACTTCAAACTCTTATTTATACTCAAAGTAGTAAAACTTGGAAAATTTATGGGCATCCAGTGAAAGATCAATGTGATAATTACAAAATGTGTGGTCCATATAGTGTTTGTGACGCTGATGCTTTTCCGGTTTGTCAATGTATTGAAGGTTTCAGTCTTAAGAATGATAGATCTTCGTTAATGGGAGAAGGTTGGTCTCAATGGTCTGACGGGTGTGTGAGCCAAACGAATTTGGCTTGTTGGAGTGATGAGTTTTATGAAATGGAGAATGTGAAGTTGCCTGAGACAAGTTCTGTATTTGTGAATACAACAATGGAGATTAAAGAATGTGGTAATTTGTGTCTTAGCAATTGTTCATGTACTGGATATGCTAATGTTTATGTAACTTCAGATGGTGGAAGTGGTTGTGTTATGTGGTTTGGTGAACTTGTTGATATCAAAAAGCATCCTGCAGAGGGACAAGATCTTTACATACGCCGTGCTCATCCAAAACTTACTATAGATACAAATGGGATAGAATTTGATACAGCAATGACCATAGCTACAGTGATTGTGGCAACCATGTTTATTGCTTCTTGTACGTATTTCTTATGGTCATGGGCTTCTAAACGTTCAGCCGGTTCAGGGCAAACTCCTCAAGAAAACCAAAGTGCAAGTCTAATTAGAGATATGAAACAAGTTAAAATAGAGGACCTTCCTTTATTTGAGTTCAAATACATTTCAACTGCAACAAATAACTTTAGTTCAGCTAATAAAATCGGACAAGGTGGTTTTGGTTCGGTGTACAAGGGAGAATTGCCAGATGGATTAGAAATAGCAGTGAAAAGACTTTCAAGAACTTCGGGACAGGGGCTAGAAGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGTTGCTGCATTGAAGGAGAAGAAAAGATGTTGGTTTATGAGTACATGCCTAATAACAGTTTAGATTTTTATCTATTTGACCCAATACAAAAGAAGGTTTTAGATTGGCAAAAACGTTTATACGTAATCGAAGGAATCTCTCGAGGCCTGCTTTATCTTCATAGAGATTCGAGATTAAGAATAATACACAGAGACCTAAAGCCAAGTAATATCTTGTTGGATGGAGAAATGAATCCAAAAATATCTGACTTTGGCATGGCCAGAATCTTTGGAGGTACCGAAAATGAGGGCAATACAAGAAGAATTGTGGGAACATATGGATACATGTCTCCAGAGTATGCAATGGAAGGACTGTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTTTTGCTCCTCGAGATAATAAGCGGTAGGAAAAACACAAGTTTCTATAATCACGAGCAAGCACTCAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGATTGTAACTTTGATAGATCCAGAAATATGTAGTCCAGATTATGTAGATGACATTTTGAGATGCATACATATTGGACTTCTTTGTGTGCAAGAGATTGCAAAGGAGAGACCTACTATGGCAACAGTTGTTTCAATGCTTAATAGTGAGATTGTTAAATTTCCTCGTCCATTTCAACCTGGATTCATTCTAAGACAGACTGAACTGAGAAGAGACATAGATCAACAATGTAACAACTTAAATTCTTTGAACAATGTCACTGTCACAAGCTTACAAGGCAGATAG 2478 0.3705 MQRFFLLVLFITSFSILITISTSTDTLTSSQVLTTNQTLESSNGTFVLGFFPGTNSNIYLAIWYKNIQPRTVVWVANRDNPLQNNSTNDGFLKIGDNGNILILNSLTDSDNNLVWSSNQTTVTKNEVVLQLLDNGNLVVRESNVNDPTKYLWQSFNYPTDTLLPSMSIGWNFDKNTEKHLTSWKITGKDPSTGDYTYKVDFHGLPQIFLWNGENIIYRRRPWNDDISGNFEFSWNKHGINYRFSNENASIFSRLVVNSVGELQTLIYTQSSKTWKIYGHPVKDQCDNYKMCGPYSVCDADAFPVCQCIEGFSLKNDRSSLMGEGWSQWSDGCVSQTNLACWSDEFYEMENVKLPETSSVFVNTTMEIKECGNLCLSNCSCTGYANVYVTSDGGSGCVMWFGELVDIKKHPAEGQDLYIRRAHPKLTIDTNGIEFDTAMTIATVIVATMFIASCTYFLWSWASKRSAGSGQTPQENQSASLIRDMKQVKIEDLPLFEFKYISTATNNFSSANKIGQGGFGSVYKGELPDGLEIAVKRLSRTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFDPIQKKVLDWQKRLYVIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDGEMNPKISDFGMARIFGGTENEGNTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHEQALSLLGYAWKLWNEEEIVTLIDPEICSPDYVDDILRCIHIGLLCVQEIAKERPTMATVVSMLNSEIVKFPRPFQPGFILRQTELRRDIDQQCNNLNSLNNVTVTSLQGR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00353 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Trre3g00353 825 Pfam PAN-like domain 342 406 IPR003609 -
Trre3g00353 825 SMART ntp_6 340 420 IPR003609 -
Trre3g00353 825 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Trre3g00353 825 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Trre3g00353 825 CDD B_lectin 31 158 IPR001480 -
Trre3g00353 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Trre3g00353 825 SMART serkin_6 507 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00353 825 SUPERFAMILY Protein kinase-like (PK-like) 492 778 IPR011009 -
Trre3g00353 825 Pfam Protein tyrosine and serine/threonine kinase 510 778 IPR001245 GO:0004672|GO:0006468
Trre3g00353 825 ProSiteProfiles Bulb-type lectin domain profile. 24 152 IPR001480 -
Trre3g00353 825 CDD STKc_IRAK 513 779 - -
Trre3g00353 825 Gene3D - 18 156 IPR036426 -
Trre3g00353 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 582 - -
Trre3g00353 825 SMART blect_4 30 158 IPR001480 -
Trre3g00353 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 223 IPR036426 -
Trre3g00353 825 Gene3D Transferase(Phosphotransferase) domain 1 583 785 - -
Trre3g00353 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 769 - -
Trre3g00353 825 ProSiteProfiles Protein kinase domain profile. 507 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00353 825 Pfam D-mannose binding lectin 71 184 IPR001480 -
Trre3g00353 825 Gene3D Phosphorylase Kinase; domain 1 468 582 - -
Trre3g00353 825 Pfam S-locus glycoprotein domain 229 314 IPR000858 GO:0048544
Trre3g00353 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Trre3g00353 825 CDD PAN_AP_plant 336 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00353 Trre-Chr3 2305627 2308952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00353 495 803 Receptor kinase-like Gene Family AT4G05200 59.223 4.43e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00353 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00353 - - gmx:106799702 868.996