Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00352 ATGTTAGGACTCAATATTGGGCAAGGAAACATGTTACATATTTTATTCACTCTCTTAATAACCCTTTGTTGCACCATAATGAACATTGGTGGTGCTTCTGTGAACACAATTACAAAGTCTCAAATATTGATCAAAGATTCTCAAACTCTAAGCTCTGACGACGGCGCATTCAAGCTTGGATTCTTCACCCCCATCAACACAACAAATCGCTACGTAGGTATATGGTATGTCTCTGAATCCAACGTTGTATGGGTAGCCAACAGAGAAACACCACTACATGATTCTTCTGGTGTTGTCATCATATCTGATGACAATACCAACCTTTTAGTAATGAATGGACAAAAACATGTTATATGGTCATCAAATGTCTCAAATATTGCACCGAATTTTAATGTCACCGTTCAACTTCAAAATACTGGAAATCTCGTCTTGCAGGAAGACACTACAGACAGGATAATATGGTCGAGTTTCAAACATCCAACTGATACATTCATTCCAAATATCATAATAAGCACAAACCAAATAACAGGAGAAAGAGTAGAAGCTACTTCATGGAAAAGTCCTTCTGATCCGGCTATTGGAAACTTTACTGGCGGCCTTGAGCGTCTCAGTGCTCCTGAAATTTTTATATGGAACCGAAAAAAACCTTCTTGGCGTTCAGGTCCATGGAATGGTCAAGCTTTTCTTGGATTGAGAACTAATTTGTTGTCTACTTCTGCATATCTAAATGGATTTACCTTTACAAGGAAAGATAATGGAAGTCTTGTTGAGATTTCATATACATTGCCAAATAGTTCTTACTTTGGAACCCTTGTGGTGGATTATGAAGGACATCTTGTGTATACGGCATGGATCAATAGGATTCAAGTTAGGAAGCGGGTTGTTCAACAAAACAAATGCGATGTTTATGGTATTTGTGGTCCTAATGGAAGCTGTGATTTTAAAGATTCAGCCCCAATATGTACATGTTTGACAGGTTTTGAGCCAAAAAACGCAGATGAATGGAATAGACAAAATTGGATAAATGGGTGTGTGAGAAAGGCATCACTAAAGTGTGAGAGGGTGAAAAATAATAGGAGTGCATTAGATGGTGAAGAAGATGGGTTTATAAAACTACAGACGACAAAACCACCGGATTTTGTGGAGCAATCATATCTTTCTGAGGATGCATGTAGAACTCAGTGCTTGAATGATTGTAATTGCACAGCTTATGGATTTGACAATGGAATTCAGTGCTTGATTTGGAGTGGTAAATTAATCGATATAGTGAGGTTTACTAGTGGAGGCATCGATCTTTTCATACGCCAAGCTTATTCAGAACTTGCATCTATACAAACAAATGAGATTCATGGGAAGAAAAAGAAAAATGTTACACCAATCATCATAGCTACTGTGATAGTGGGTGCAATTATTGTTGCTACTTGTGCTTATTTCTTTTGGTCATGGGCTTCTAAACGTTCAGGGCAAACCCATCAAGAAAACCAAATTGCAAGTTTAAGTGGAAATATGAAACAAGTTAAAATAGAGGACCTTCCTTTATTTGAGTTCAAAAACATTTCAACTGCAACAAATAACTTTAGTTTAGCTAATAAGATTGGACATGGTGGTTTTGGTTCAGTGTACAAGGGAGAATTGCCAGATGGATTAGAAATAGCAGTGAAACGGCTTTCAAGAACATCAGGACAAGGTCTAGAGGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGTTGCTGCATTGAAGGAGAAGAAAAGATGTTGGTCTATGAGTACATGCCTAATAACAGTTTAGATTTTTATCTATTTGACCCGGTAAAAAAGAAGATTTTAGATTGGCAAAAACGGCTATATATAATTCAAGGAATCTCTCGAGGGTTGCTTTATCTTCATAGAGATTCAAGATTGAGAATAATACACAGAGACCTAAAGCTGAGTAATATCTTGTTGGATGGAGAGCTTAATCCAAAAATATCTGACTTTGGCATGGCTAAAATCTTTGGAAGTAGTGAAAATGAGGGAAATACAAGAAGGATTATGGGAACATACGGATACATGTCTCCAGAATATGCAATGGAGGGATTGTTTTCTGAAAAATCAGATGTTTTTAGCTTTGGAGTTCTGCTCCTCGAGATAATAAGCGGTAGAAAAAACACAAGTTTCTATAATCACGATCAAGCACTTAGCCTCTTAGGATATGCATGGAAACTGTGGAATGAAGAGGAGATTATAACTTTGATTGATCCAGAAATATGTAATCCAGATTATGTAGATGACATTTTGAGATGCATACATATTGGACTACTTTGTGTGCAAGAAATTGCAAAGGAGAGACCTAATATGGCAACAGTTGTTTCAATGCTTAATAGTGAAATTGTTAAATTTCCTCATCCATCTCAACCTGCATTCATTCAAAGGCAGACTGAGCATAAAGGAGAGTCATCTCAGTCTCAACAGAGTCATGACTCGAATTCGAGGAATGGTATCACTATCACAAACTTGCAAGGCAGATAA 2541 0.3695 MLGLNIGQGNMLHILFTLLITLCCTIMNIGGASVNTITKSQILIKDSQTLSSDDGAFKLGFFTPINTTNRYVGIWYVSESNVVWVANRETPLHDSSGVVIISDDNTNLLVMNGQKHVIWSSNVSNIAPNFNVTVQLQNTGNLVLQEDTTDRIIWSSFKHPTDTFIPNIIISTNQITGERVEATSWKSPSDPAIGNFTGGLERLSAPEIFIWNRKKPSWRSGPWNGQAFLGLRTNLLSTSAYLNGFTFTRKDNGSLVEISYTLPNSSYFGTLVVDYEGHLVYTAWINRIQVRKRVVQQNKCDVYGICGPNGSCDFKDSAPICTCLTGFEPKNADEWNRQNWINGCVRKASLKCERVKNNRSALDGEEDGFIKLQTTKPPDFVEQSYLSEDACRTQCLNDCNCTAYGFDNGIQCLIWSGKLIDIVRFTSGGIDLFIRQAYSELASIQTNEIHGKKKKNVTPIIIATVIVGAIIVATCAYFFWSWASKRSGQTHQENQIASLSGNMKQVKIEDLPLFEFKNISTATNNFSLANKIGHGGFGSVYKGELPDGLEIAVKRLSRTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFDPVKKKILDWQKRLYIIQGISRGLLYLHRDSRLRIIHRDLKLSNILLDGELNPKISDFGMAKIFGSSENEGNTRRIMGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHDQALSLLGYAWKLWNEEEIITLIDPEICNPDYVDDILRCIHIGLLCVQEIAKERPNMATVVSMLNSEIVKFPHPSQPAFIQRQTEHKGESSQSQQSHDSNSRNGITITNLQGR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00352 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 191 IPR036426 -
Trre3g00352 846 CDD PAN_AP_plant 363 435 - -
Trre3g00352 846 SMART blect_4 41 160 IPR001480 -
Trre3g00352 846 ProSiteProfiles PAN/Apple domain profile. 352 437 IPR003609 -
Trre3g00352 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Trre3g00352 846 Gene3D - 31 158 IPR036426 -
Trre3g00352 846 Gene3D Phosphorylase Kinase; domain 1 484 601 - -
Trre3g00352 846 SMART serkin_6 526 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00352 846 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Trre3g00352 846 MobiDBLite consensus disorder prediction 814 846 - -
Trre3g00352 846 Pfam S-locus glycoprotein domain 218 331 IPR000858 GO:0048544
Trre3g00352 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 788 - -
Trre3g00352 846 SUPERFAMILY Protein kinase-like (PK-like) 509 797 IPR011009 -
Trre3g00352 846 CDD STKc_IRAK 532 798 - -
Trre3g00352 846 PIRSF SRK 8 846 IPR024171 GO:0004674
Trre3g00352 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Trre3g00352 846 Pfam PAN-like domain 365 422 IPR003609 -
Trre3g00352 846 ProSiteProfiles Protein kinase domain profile. 526 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00352 846 Pfam D-mannose binding lectin 82 186 IPR001480 -
Trre3g00352 846 ProSiteProfiles Bulb-type lectin domain profile. 35 157 IPR001480 -
Trre3g00352 846 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 601 - -
Trre3g00352 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 157 - -
Trre3g00352 846 ProSiteProfiles EGF-like domain profile. 296 333 IPR000742 -
Trre3g00352 846 Pfam Protein tyrosine and serine/threonine kinase 528 797 IPR001245 GO:0004672|GO:0006468
Trre3g00352 846 SMART ntp_6 364 436 IPR003609 -
Trre3g00352 846 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Trre3g00352 846 CDD B_lectin 43 160 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00352 Trre-Chr3 2296664 2300377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00352 453 836 Receptor kinase-like Gene Family AT4G05200 50.259 3.04e-129 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00352 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00352 - - mtr:11424236 1246.49