Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00350 ATGATGTTCACAAAATTCCAACAACAAAGTTTACTTTTTTTGTTTTTGTTCTGTTTCCTCTGTTTCTGTTCTGTTTCCTCTGTTTCACCTTTAAGTTTCAGAATCAAACATGGTGATTTAATCAGAGACAAAGAAGGTGAAGTTTTAGTCTCAGATGGTTTCAACTTTGTAATGGGTTTTTTCGGTTTTCAAAACTCTCGTTACGTTGGAATTTGGTACTACAACATTCCTGATTCTCAAGCTATTTGGGTTGCAAACAGAAACAAACCCATCAATGGAAACGGTGGTTCTTTCACTATATCAACAAATGGTAATTTAGTTATCTTAGATGAAAAGAAAAATCAAATTTGGTCTACAAATGTTTCTATCACTCACAACAATAAGAATAACTCTGAAGCTGTTCTTAAAGATGATGGTAATCTTGTTCTTTCAAATGAGAAAGATGTTTTATGGCAAAGTTTTGAGAATCCAAGTGATACTTATGTTCCTGGTATGAAAGTTCCTGTGAATGGAAAAAAGAAGAGTTTTAGATTCACTTCATGGAAATCAAGTACAGATCCTTCAGAAGGGAATCATACTATGGGAGTTGATCCAGAAGGGTTACCACCACAGGTAGTAGTTTGGGAAGGAGAAAGAAGAAGGTGGAGAAGTGGTTATTGGGATGGTAGAATTTTTAATGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTGCTTAATTGGGATGGTAATGGTAGGTCTTTTGTTTATAATGATAATGAGTTTAAGATAAATGGTACTAGTTCAGTTAGGTTTCAGATTGGTTGGGATGGTATTGAAAGAGAGTTTTTATGGGATGAAAATAAGAAACGTTGGATTGTGATACAAACAGGACCTCATAATCAGTGTGAGTTTTATAATTATTGTGGTGATTTTGCAGCTTGTGATTTACCGGTTTCTGGTTCGGCTATTTGTCGTTGCTTACGAGGGTTTGAGCAAAAGGATAAGAAGAATTGGTCAAGTGGGTGTAAGAGGATAACACCATTGAAGGGTGATCAGAGAAATGGGAATGATACTCAGGTGAATAATGTTGGTGAGGATGGTTTCTTGGAGAGTAAATGTATGAAGTTACCTGATTTCGCAAATGTGATAGATACTAAGGATTGTGAAGATACTTGTTTGGGGAATGGTTCTTGTACTGCTTATGCAAAAGTTATTGGAATTGGTTGTATGATTTGGTATGGTGATTTGATTGATGTTCAACACTTTAAAAGCGGCGGAAATACACTTCACATTCGTCTTGCGCGTTCCGATTTAGGCGATGGAGGGAAACACAACAGGATTATGATTTTAATTATATCAGCTATTCTAGCAGGACTAATCTGTCTAGGAATCATTGTCTGCTTGGTATGGAGGTACAAGGGAAAACTCAAAGTTTTGCCTGCAGTTTCTTCAGCTTCATGTTGCAAAAATACTGACGTGCTACCGGTCTATGATGCAAGTAAGAGCAGAGAGATGTCAGCAGAAATATCAGGACCAGTTGAACTTGGTTTGGAAGGAAATCAACTAAGCGGAGCGGAGCTTCCATTTTACAATTTCAGCTGCATGTCATTAGCCACCAACAATTTTTCTGAAGAAAATAAGCTCGGACAAGGCGGTTTCGGTCCTGTGTACAAGGGTAAGCTTCCATCCGGAGAAGAAATAGCTGTCAAGAGGCTTTCAAGACGGTCCGGCCAAGGTTTAGAGGAATTCAAAACTGAAATGATGCTGATTGCAAAACTACAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTCAAGGGGATGAAAAATTGCTTGTATATGAATTTATGCCGAACAAAAGCTTGGATCGCTTTTTATTTGATCCTATCAAGCAAACACAATTAGATTGGGCGAGACGATATGAAATCATTGAAGGTGTTGCAAGAGGACTACTTTATCTGCATCGCGATTCAAGACTCAGAATAATCCATCGAGACCTAAAAGCAAGCAACATTTTGTTAGATGAAAACATGAACCCAAAAATATCAGACTTTGGCTTGGCCCGAATATTCGGTGGGAACCAGCATGAAGCCAATACAGCTAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATATGCCATGGAAGGTCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGTGTTTTGCTACTAGAGATTTTGAGCGGCCGCAGAAACACTAGCTTCCGTCATTCAGATGATTCAAATCTCATAGGATATGCGTGGAATCTTTGGAACGATCACAGAGCAATGGAACTTGTCGATGCTTGCATTCGTGATTCAAGTCCTAAAAACAAAATATTGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAAAGACCAAACATGTCGAACGTTGTGTTGATGCTTGAGAGTGAAGCAAAAACTCTTCCCATACCAACACAGCCTTTGATTACTTCGATGAGATCCGAGGATAGAGAGTTTAACATGGATGGTCTTGATGTTTCAAATGATCTCACAGTAACAATGTTGGTAGGGAGATAG 2556 0.3803 MMFTKFQQQSLLFLFLFCFLCFCSVSSVSPLSFRIKHGDLIRDKEGEVLVSDGFNFVMGFFGFQNSRYVGIWYYNIPDSQAIWVANRNKPINGNGGSFTISTNGNLVILDEKKNQIWSTNVSITHNNKNNSEAVLKDDGNLVLSNEKDVLWQSFENPSDTYVPGMKVPVNGKKKSFRFTSWKSSTDPSEGNHTMGVDPEGLPPQVVVWEGERRRWRSGYWDGRIFNGVDMTGSFLHGFVLNWDGNGRSFVYNDNEFKINGTSSVRFQIGWDGIEREFLWDENKKRWIVIQTGPHNQCEFYNYCGDFAACDLPVSGSAICRCLRGFEQKDKKNWSSGCKRITPLKGDQRNGNDTQVNNVGEDGFLESKCMKLPDFANVIDTKDCEDTCLGNGSCTAYAKVIGIGCMIWYGDLIDVQHFKSGGNTLHIRLARSDLGDGGKHNRIMILIISAILAGLICLGIIVCLVWRYKGKLKVLPAVSSASCCKNTDVLPVYDASKSREMSAEISGPVELGLEGNQLSGAELPFYNFSCMSLATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSGQGLEEFKTEMMLIAKLQHRNLVRLMGCSIQGDEKLLVYEFMPNKSLDRFLFDPIKQTQLDWARRYEIIEGVARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQHEANTARVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSNLIGYAWNLWNDHRAMELVDACIRDSSPKNKILRCIQIGMLCVQDSAAQRPNMSNVVLMLESEAKTLPIPTQPLITSMRSEDREFNMDGLDVSNDLTVTMLVGR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00350 851 SMART ntp_6 358 428 IPR003609 -
Trre3g00350 851 Pfam Protein tyrosine and serine/threonine kinase 540 805 IPR001245 GO:0004672|GO:0006468
Trre3g00350 851 CDD PAN_AP_plant 356 429 - -
Trre3g00350 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 613 815 - -
Trre3g00350 851 Gene3D - 33 154 IPR036426 -
Trre3g00350 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 505 612 - -
Trre3g00350 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 187 IPR036426 -
Trre3g00350 851 Pfam PAN-like domain 359 414 IPR003609 -
Trre3g00350 851 Gene3D Phosphorylase Kinase; domain 1 513 612 - -
Trre3g00350 851 CDD B_lectin 46 157 IPR001480 -
Trre3g00350 851 CDD STKc_IRAK 543 808 - -
Trre3g00350 851 Pfam D-mannose binding lectin 82 182 IPR001480 -
Trre3g00350 851 SMART blect_4 40 157 IPR001480 -
Trre3g00350 851 ProSiteProfiles Protein kinase domain profile. 537 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00350 851 SMART serkin_6 537 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00350 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 154 - -
Trre3g00350 851 PIRSF SRK 4 851 IPR024171 GO:0004674
Trre3g00350 851 MobiDBLite consensus disorder prediction 180 201 - -
Trre3g00350 851 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 798 - -
Trre3g00350 851 ProSiteProfiles PAN/Apple domain profile. 358 429 IPR003609 -
Trre3g00350 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Trre3g00350 851 Gene3D Transferase(Phosphotransferase) domain 1 613 816 - -
Trre3g00350 851 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Trre3g00350 851 Pfam S-locus glycoprotein domain 215 328 IPR000858 GO:0048544
Trre3g00350 851 SUPERFAMILY Protein kinase-like (PK-like) 523 829 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00350 Trre-Chr3 2276589 2279983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00350 511 820 Receptor kinase-like Gene Family AT4G23230 60.129 5.35e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00350 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00350 - - gmx:102660295 1212.98