Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00349 ATGATGTTCACAAAATTCCAACAACAAAGTTTACTTTTTTTGTTTTTGTTCTGTTTCCTCTGTTTCTGTTCTGTTTCCTCTGTTTCACCTTTAAGTTTCAGAATCAAACATGGTGATTTAATCAGAGACAAAGAAGGTGAAGTTTTAGTCTCAGATGGTTTCAACTTTGTAATGGGTTTTTTCGGTTTTCAAAACTCTCGTTACGTTGGAATTTGGTACTACAACATTCCTGATTCTCAAGCTATTTGGGTTGCAAACAGAAACAAACCCATCAATGGAAACGGTGGTTCTTTCACTATATCAACAAATGGTAATTTAGTTATCTTAGATGAAAAGAAAAATCAAATTTGGTCTACAAATGTTTCTATCACTCACAACAATAAGAATAACTCTGAAGCTGTTCTTAAAGATGATGGTAATCTTGTTCTTTCAAATGAGAAAGATGTTTTATGGCAAAGTTTTGAGAATCCAAGTGATACTTATGTTCCTGGTATGAAAGTTCCTGTGAATGGAAAAAAGAAGAGTTTTAGATTCACTTCATGGAAATCAAGTACAGATCCTTCAGAAGGGAATCATACTATGGGAGTTGATCCAGAAGGGTTACCACCACAGGTAGTAGTTTGGGAAGGAGAAAGAAGAAGGTGGAGAAGTGGTTATTGGGATGGTAGAATTTTTAATGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTGCTTAATTGGGATGGTAATGGTAGGTCTTTTGTTTATAATGATAATGAGTTTAAGATAAATGGTACTAGTTCAGTTAGGTTTCAGATTGGTTGGGATGGTATTGAAAGAGAGTTTTTATGGGATGAAAATAAGAAACGTTGGATTGTGATACAAACAGGACCTCATAATCAGTGTGAGTTTTATAATTATTGTGGTGATTTTGCAGCTTGTGATTTACCGGTTTCTGGTTCGGCTATTTGTCGTTGCTTACGAGGGTTTGAGCAAAAGGATAAGAAGAATTGGTCAAGTGGGTGTAAGAGGATAACACCATTGAAGGGTGATCAGAGAAATGGGAATGATACTCAGGTGAATAATGTTGGTGAGGATGGTTTCTTGGAGAGTAAATGTATGAAGTTACCTGATTTCGCAAATGTGATAGATACTAAGGATTGTGAAGATACTTGTTTGGGGAATGGTTCTTGTACTGCTTATGCAAAAGTTATTGGAATTGGTTGTATGATTTGGTATGGTGATTTGATTGATGTTCAACACTTTAAAAGCGGCGGAAATACACTTCACATTCGTCTTGCGCGTTCCGATTTAGGCGATGGAGGGAAACACAACAGGATTATGATTTTAATTATATCAGCTATTCTAGCAGGACTAATCTGTCTAGGAATCATTGTCTGCTTGGTATGGAGGTACAAGGGAAAACTCAAAGCTTCATGTTGCAAAAATACTGACGTGCTACCGGTCTATGATGCAAGTAAGAGCAGAGAGATGTCAGCAGAAATATCAGGACCAGTTGAACTTGGTTTGGAAGGAAATCAACTAAGCGGAGCGGAGCTTCCATTTTACAATTTCAGCTGCATGTCATTAGCCACCAACAATTTTTCTGAAGAAAATAAGCTCGGACAAGGCGGTTTCGGTCCTGTGTACAAGGGTAAGCTTCCATCCGGAGAAGAAATAGCTGTCAAGAGGCTTTCAAGACGGTCCGGCCAAGGTTTAGAGGAATTCAAAACTGAAATGATGCTGATTGCAAAACTACAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTCAAGGGGATGAAAAATTGCTTGTATATGAATTTATGCCGAACAAAAGCTTGGATCGCTTTTTATTTGATCCTATCAAGCAAACACAATTAGATTGGGCGAGACGATATGAAATCATTGAAGGTGTTGCAAGAGGACTACTTTATCTGCATCGCGATTCAAGACTCAGAATAATCCATCGAGACCTAAAAGCAAGCAACATTTTGTTAGATGAAAACATGAACCCAAAAATATCAGACTTTGGCTTGGCCCGAATATTCGGTGGGAACCAGCATGAAGCCAATACAGCTAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATATGCCATGGAAGGTCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGTGTTTTGCTACTAGAGATTTTGAGCGGCCGCAGAAACACTAGCTTCCGTCATTCAGATGATTCAAATCTCATAGGATATGCGTGGAATCTTTGGAACGATCACAGAGCAATGGAACTTGTCGATGCTTGCATTCGTGATTCAAGTCCTAAAAACAAAATATTGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAAAGACCAAACATGTCGAACGTTGTGTTGATGCTTGAGAGTGAAGCAAAAACTCTTCCCATACCAACACAGCCTTTGATTACTTCGATGAGATCCGAGGATAGAGAGTTTAACATGGATGGTCTTGATGTTTCAAATGATCTCACAGTAACAATGTTGGTAGGGAGATAG 2535 0.3799 MMFTKFQQQSLLFLFLFCFLCFCSVSSVSPLSFRIKHGDLIRDKEGEVLVSDGFNFVMGFFGFQNSRYVGIWYYNIPDSQAIWVANRNKPINGNGGSFTISTNGNLVILDEKKNQIWSTNVSITHNNKNNSEAVLKDDGNLVLSNEKDVLWQSFENPSDTYVPGMKVPVNGKKKSFRFTSWKSSTDPSEGNHTMGVDPEGLPPQVVVWEGERRRWRSGYWDGRIFNGVDMTGSFLHGFVLNWDGNGRSFVYNDNEFKINGTSSVRFQIGWDGIEREFLWDENKKRWIVIQTGPHNQCEFYNYCGDFAACDLPVSGSAICRCLRGFEQKDKKNWSSGCKRITPLKGDQRNGNDTQVNNVGEDGFLESKCMKLPDFANVIDTKDCEDTCLGNGSCTAYAKVIGIGCMIWYGDLIDVQHFKSGGNTLHIRLARSDLGDGGKHNRIMILIISAILAGLICLGIIVCLVWRYKGKLKASCCKNTDVLPVYDASKSREMSAEISGPVELGLEGNQLSGAELPFYNFSCMSLATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSGQGLEEFKTEMMLIAKLQHRNLVRLMGCSIQGDEKLLVYEFMPNKSLDRFLFDPIKQTQLDWARRYEIIEGVARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQHEANTARVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSNLIGYAWNLWNDHRAMELVDACIRDSSPKNKILRCIQIGMLCVQDSAAQRPNMSNVVLMLESEAKTLPIPTQPLITSMRSEDREFNMDGLDVSNDLTVTMLVGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00349 844 SMART ntp_6 358 428 IPR003609 -
Trre3g00349 844 Gene3D Transferase(Phosphotransferase) domain 1 606 809 - -
Trre3g00349 844 Pfam PAN-like domain 359 414 IPR003609 -
Trre3g00349 844 CDD PAN_AP_plant 356 429 - -
Trre3g00349 844 SMART serkin_6 530 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00349 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 187 IPR036426 -
Trre3g00349 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 791 - -
Trre3g00349 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Trre3g00349 844 Gene3D Phosphorylase Kinase; domain 1 506 605 - -
Trre3g00349 844 SUPERFAMILY Protein kinase-like (PK-like) 516 822 IPR011009 -
Trre3g00349 844 CDD B_lectin 46 157 IPR001480 -
Trre3g00349 844 SMART blect_4 40 157 IPR001480 -
Trre3g00349 844 Pfam Protein tyrosine and serine/threonine kinase 533 798 IPR001245 GO:0004672|GO:0006468
Trre3g00349 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 154 - -
Trre3g00349 844 ProSiteProfiles Protein kinase domain profile. 530 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00349 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 498 605 - -
Trre3g00349 844 MobiDBLite consensus disorder prediction 180 201 - -
Trre3g00349 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 606 808 - -
Trre3g00349 844 Pfam S-locus glycoprotein domain 215 328 IPR000858 GO:0048544
Trre3g00349 844 PIRSF SRK 4 844 IPR024171 GO:0004674
Trre3g00349 844 ProSiteProfiles PAN/Apple domain profile. 358 429 IPR003609 -
Trre3g00349 844 CDD STKc_IRAK 536 801 - -
Trre3g00349 844 Gene3D - 33 154 IPR036426 -
Trre3g00349 844 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Trre3g00349 844 Pfam D-mannose binding lectin 82 182 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00349 Trre-Chr3 2276589 2279983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00349 448 813 Receptor kinase-like Gene Family AT4G23230 54.620 2.94e-130 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00349 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00349 - - gmx:102660295 1195.65