Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00348 ATGAGAGGTTTTTTTTTCTTGTTCTTGTTCATCACTTCATTTTCTTTTCTCATCACAATTTCAACTTCTACAGATACCTTAACCTCATCACAAATTCTAAGAACAAATCAGACTCTTGTATCTTCTAACCAAACATTCATTCTTGGTTTCATCCCAGGAACAAATTCAAACATTTATTTAGCTATATGGTACAAAAACATTAACCCAAGAACAGTTGTTTGGGTTGCAAACAGAGACAATCCTCTTCAAAATAATTCAACCAATGATGGCTTTCTCAAAATCAGTGACAATGGAAACATAGTACTTCTCAATTCATCATCAAACAACAACCTCGTATGGTCTTCGAATCAAACAACAGTTACTAACAACCAAGTTGTTCTTCAGCTTTTAGATAATGGAAATTTAGTTCTTCTAAGAGAAACAAACGTGAATGACCCAACAAAATATCTATGGCAAAGTTTCGATTTTCCAACAGATACTTTGTTACCATCCATGAAAATGGGTTGGAACTTGGACAAAAAAACCGAAAAGCATTTAACTTCATGGAAGATCACAGATAAAGATCCTTCAACAGGTGATTATTCATTCAAAATTGATTTTCATGGTTTGCCAGAAATTTACCTACGGAATGATGATACCATAATCTATCGAAGTGGACCTTGGAATGGTGAAAGATTTAGTGGTGTACCGGAGATGGCCCCCGATACAGATTCAATAGTTTTCGATTTTTCATCGAATGAACACGGTGTTAACTACTCGTTTTCGATCGGTAATCCATCCATTTTTTCGCGACTCATGGTGAATCCGGCCGGTCTACTTCAACGTCGAACTTGGGTTCAAAGTACTAACACTTGGACAACGTTTTGGTATGCACCGAAAGATCAATGCGATCATTACAAAGCGTGTGGTCCATATAGTGTTTGTGACACAAATGCTTCACCGGTTTGTTTATGTGTGAAAGGTTTTAGTCCTAAGAATGAACAAGCTTGGAAATTGAGAGATGGATCAGATGGGTGTGTGAGGAATACAAATTTGGATTGTGTGAGTGATAAGTTTTATCATATGGAGGATGTGAAGTTGCCTGAGACAAGTTCTGTTTTTGTGAACAGAACAATGGGGATTGATGAATGTGGTGATTTGTGTCATAGGAATTGTTCATGTACTGGTTATGCTAATGTTTATGTTACAAATGGTGGAAGTGGTTGTGTTATGTGGTTTGGTGAACTTGTTGATATAAGAAGTTATTCTGATGGTGGACAAGATCTTTTTGTTAGATTAGCAGCTTCTGAGATAGGATCTACAAGTGGCTCTCAAAAGAAAAATCATAAAGCTGAGATTATAGGAATTACAATTTCTGCAGCTGTTATAGTTTTGGGACTAAGTTTCATTTTATGCAAGAGGAGAAAATTGCTAAGTAAATTTAATGGAAAAACAGACAACAGAGGTTCTCTCCAAAGAAGTAGAGAAATATTGATGAATGAGGTGGTATTTTCAAGTAAAAGAGGTAGCTCAGGAGAAAGGGACATGGATGACTTAGAGTTACCAATCTTTGATTTTAATACCATAACAATGGCTACAAACAACTTCATCGAATCAAATAAACTTGGAGAAGGAGGCTTTGGTATTGTTTATAGGGGAAGGTTGATTGAAGGCCAAGAAATTGCTGTCAAAAGGTTATCAAAAACTTCAGGACAAGGAATTGAAGAATTTAAGAATGAGGTCAGGTTAATTGCCAAGCTTCAACATAGAAATCTTGTTCGACTATTAGGTTGTTGCATCGAAAAGGATGAGAAGCTTCTAGTGTATGAGTATATGGAAAATAGAAGCCTTGATTCCATTTTGTTTGACAAAACTAGAAAACCCTTATTAGACTGGAAAAGGCGATACGACGTTATATGTGGAATAGCTAGAGGACTTCTTTATCTGCATCATGATTCAAGACTCAGGATTATCCATAGGGATCTCAAGGCAAGCAATATACTACTCGACAGTGAAATGAAACCAAAAATATCCGACTTTGGAATGGCTAGAATATTTGGCCAAAATCAAACAGAAGCGAATACATTGCGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCTATGGACGGAAATTTCTCAGTGAAATCAGATGTATTTAGCTTCGGAGTTCTTGTGCTAGAGATTATAAGTGGAAAGAAAAATAGAGGATTCTACTACGCAAATGATGATATGAATCTTCTAAAAAATGCATGGACGCAGTGGAGAGAAGGCACTGCATTGGAACTCGTTGATTCGTCAATTGGCGAATCATATACATCATCTGAAGTTCTTAGATGCATACATGTTGGACTATTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGCCTTCAGTGCTCTTGATGCTTGGCAGTGAAACTGCACTAATGCCAGAACCTAGAAGCCCCGGGTTTTCAGTCGGAAGATCAAAGAATCCTCCTGAAACTGATTCCTCTTCAAGTAAGCAAGATGAAACATGGAGTGTGAACCAAGTTACTGTCACATTGCTAAATGCTAGGTAG 2553 0.3709 MRGFFFLFLFITSFSFLITISTSTDTLTSSQILRTNQTLVSSNQTFILGFIPGTNSNIYLAIWYKNINPRTVVWVANRDNPLQNNSTNDGFLKISDNGNIVLLNSSSNNNLVWSSNQTTVTNNQVVLQLLDNGNLVLLRETNVNDPTKYLWQSFDFPTDTLLPSMKMGWNLDKKTEKHLTSWKITDKDPSTGDYSFKIDFHGLPEIYLRNDDTIIYRSGPWNGERFSGVPEMAPDTDSIVFDFSSNEHGVNYSFSIGNPSIFSRLMVNPAGLLQRRTWVQSTNTWTTFWYAPKDQCDHYKACGPYSVCDTNASPVCLCVKGFSPKNEQAWKLRDGSDGCVRNTNLDCVSDKFYHMEDVKLPETSSVFVNRTMGIDECGDLCHRNCSCTGYANVYVTNGGSGCVMWFGELVDIRSYSDGGQDLFVRLAASEIGSTSGSQKKNHKAEIIGITISAAVIVLGLSFILCKRRKLLSKFNGKTDNRGSLQRSREILMNEVVFSSKRGSSGERDMDDLELPIFDFNTITMATNNFIESNKLGEGGFGIVYRGRLIEGQEIAVKRLSKTSGQGIEEFKNEVRLIAKLQHRNLVRLLGCCIEKDEKLLVYEYMENRSLDSILFDKTRKPLLDWKRRYDVICGIARGLLYLHHDSRLRIIHRDLKASNILLDSEMKPKISDFGMARIFGQNQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYANDDMNLLKNAWTQWREGTALELVDSSIGESYTSSEVLRCIHVGLLCVQERAEDRPTMPSVLLMLGSETALMPEPRSPGFSVGRSKNPPETDSSSSKQDETWSVNQVTVTLLNAR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00348 850 PIRSF SRK 1 850 IPR024171 GO:0004674
Trre3g00348 850 ProSiteProfiles Protein kinase domain profile. 529 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00348 850 Gene3D Phosphorylase Kinase; domain 1 504 604 - -
Trre3g00348 850 SMART ntp_6 347 426 IPR003609 -
Trre3g00348 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 791 - -
Trre3g00348 850 MobiDBLite consensus disorder prediction 819 839 - -
Trre3g00348 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 493 604 - -
Trre3g00348 850 SUPERFAMILY Protein kinase-like (PK-like) 512 800 IPR011009 -
Trre3g00348 850 Pfam Protein tyrosine and serine/threonine kinase 532 796 IPR001245 GO:0004672|GO:0006468
Trre3g00348 850 Gene3D Transferase(Phosphotransferase) domain 1 605 807 - -
Trre3g00348 850 Pfam PAN-like domain 347 412 IPR003609 -
Trre3g00348 850 Pfam Receptor serine/threonine kinase 485 519 IPR022126 GO:0004674
Trre3g00348 850 Pfam Domain of unknown function (DUF3403) 802 850 IPR021820 GO:0004674
Trre3g00348 850 SMART blect_4 30 157 IPR001480 -
Trre3g00348 850 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Trre3g00348 850 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Trre3g00348 850 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Trre3g00348 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 222 IPR036426 -
Trre3g00348 850 SMART serkin_6 529 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00348 850 Pfam D-mannose binding lectin 71 183 IPR001480 -
Trre3g00348 850 MobiDBLite consensus disorder prediction 807 839 - -
Trre3g00348 850 CDD PAN_AP_plant 343 427 - -
Trre3g00348 850 CDD B_lectin 31 157 IPR001480 -
Trre3g00348 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Trre3g00348 850 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Trre3g00348 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 808 - -
Trre3g00348 850 CDD STKc_IRAK 535 800 - -
Trre3g00348 850 Gene3D - 18 154 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00348 Trre-Chr3 2266635 2271531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00348 517 850 Receptor kinase-like Gene Family AT4G11530 60.534 1.14e-136 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g00348 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00348 - - gmx:100802437 1229.16