Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00341 ATGGCAGAGGAGTTTCAAGCTGGAATTTGTGGTGAAACATGGTGGAATATTAATAATTCAACAAGAAGTGTATTTCCTCATATGATGAACTCATCATCAACATGTTCTGTTGCTGCTAATGATGTAGGGAACTATAGTACTTGGCAAAATGAACTTTTGGGTTTGAAAGAAACAAAGACTTGTTCTGTTGATGAAACTAATAATAACTTTGATTTTTCTGATTGTGCTTTGAGTTTTCTTGATGCTCAAAAGCCACAACAGAGTGAATCATCAGCTAATATTGGAACTGGTAGCATGTTGATTGATTCCACCTTACAAATTATGGGTTTTGATCTTTCATCTCCAACTTCATCCAATTGGAATCACTCCCTATTTAATTGCAATGGAAGGCAAGAGAGCAATTTTCACTCAATGATTCAAGAAGAAACATGTTTAGATTCATCTAATGATTCACAAATCCAAGTTTCAACAGTTGATGCTTTCATCAAGCCAATGGATCAAGAATTTTCCATAGATCAACAGAGTCTAAATTCTGTAACAAGCACTGGTTTATCAAATGGATATCCAATTGGATCAGTTAATATTAATAATTCCTATGGTTACCCTTCAAATTTGATACAAAGTTTATTTGATGATAATGATCCTCAACCTCAACCACATAATAACTCACTTTATACCAATCCTTCTATGTCCTATTCATCTTCTAATGAACTTTCACCAACATGGTCTAATGTATCTTCCCTTATGAAACCTTCAAATCCAAAACAACAACAACTTAGTAGTGGATTGCAATTTTCCAATAATACCCCTATTTGGAATGCTTCAGCTGAGGCACTTAATGACATCAGAGCTGGAGTTTTGGCTTCATCACAACCACAATATCAATCTCCTAATTTTGATCAAGATAACAAATTCAATTCCCCAAATGCTCTATTAAACAAGCTAAAGAGAGAAAAATCTCCAGAAATGAAAAACTCATCTGAAGCTACAGCTAAGAGGCCAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAGAAGTTAGGGGACCGTATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCTGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACTCCATACATGAAAAATGGATCTCCCATTCAACACCAACAGGGTTGTGATAATGCGAAGGACTCACAAGAGAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCGATTTCAAGCACATTTCCAATGACTAATGAGACACCGGTTGATTTCTGGACGCCTACATTTGGAGGCCCACTCTTTGGCCGATAG 1377 0.366 MAEEFQAGICGETWWNINNSTRSVFPHMMNSSSTCSVAANDVGNYSTWQNELLGLKETKTCSVDETNNNFDFSDCALSFLDAQKPQQSESSANIGTGSMLIDSTLQIMGFDLSSPTSSNWNHSLFNCNGRQESNFHSMIQEETCLDSSNDSQIQVSTVDAFIKPMDQEFSIDQQSLNSVTSTGLSNGYPIGSVNINNSYGYPSNLIQSLFDDNDPQPQPHNNSLYTNPSMSYSSSNELSPTWSNVSSLMKPSNPKQQQLSSGLQFSNNTPIWNASAEALNDIRAGVLASSQPQYQSPNFDQDNKFNSPNALLNKLKREKSPEMKNSSEATAKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGSPIQHQQGCDNAKDSQEKKQDLRSQGLCLVPISSTFPMTNETPVDFWTPTFGGPLFGR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00341 458 FunFam Transcription factor bHLH123 family 346 408 - -
Trre3g00341 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 403 IPR036638 GO:0046983
Trre3g00341 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Trre3g00341 458 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Trre3g00341 458 MobiDBLite consensus disorder prediction 206 263 - -
Trre3g00341 458 MobiDBLite consensus disorder prediction 315 331 - -
Trre3g00341 458 Gene3D - 346 406 IPR036638 GO:0046983
Trre3g00341 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 163 437 - -
Trre3g00341 458 MobiDBLite consensus disorder prediction 314 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00341 Trre-Chr3 2232562 2235183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00341 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.043 2.90e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00341 - - gmx:100794682 555.829