Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00332 ATGTTTCATTCTCTCAAAAACAAGCTTCAATGCAAACCAAACCCAAAAGAAGTTCATGATCCAAAGAAAATTAGGCACCAAAAAGGTTTACTTGATCATTCAAATATCATCCAAGGAAGCAAAAGGTACTTAACAAATTCATCAAGTTTCTATGAAGAATCTGAAGGGAGCATTGATATAAGTGATCCTATAATCAATGAAATTCTATATGATAGCTCCTCATTAAGTCAATGCAACAGTGGAATTAAGGATTGGGAAGGTGATTCTGATGATGGTCCTTCAATATTGATGTGTTACAAATGTGGTGAGAAACTGAAAAACCTTAATGCTGTTGAAACACATCATATCACTCAGCATTCAGTCACTGAATTTGAAGAAGATTCATCTAGGCATATTGTAAAAACAATATGTGAAAGTGGACAAAGCTTGGTTTGTTCTGAATTGTGGCAGATTGATTGTATCTTAAAAGTCCATAACATACCAAAAACACTTGAATGCTTTGAGGAGTATAGAGAAATGGTGAAGATTAAAGCCAACAAGCTACATAATAAGAATCATAATCCACGTTGTCTTGTTGATGGAAATGAACTTTTAATGTTCCATGGCACTAACATTGCATGCTCTCTTGGAATAAATAATTCTTATAGTTTGTGCAATTTAGACTATTGTGGTGTATGTCAAATTTTGAGGCATGGTTTCTTGACTAATAAGGAATTTCAAGGTGCATTAGGAGTTTACACTACTTCAACAAGTGGAAAAGCCTTTGATTCTATTGTGCTATGTGATGAGAGAGCATTTATAAGAAAATCAGTTATAGTGTGTAGAGTAATAGCTGGGAGAGTTCATTGTCCATTTGAAGAAATTCAAGAAAAAGTTGATTCAAGATTTGATTCATTGGCTGAAAAGTTAACGGTGATTTATTACATCACAAGAAGATATAAAGTAAAAAACTGTTGGACGGCGAACGAGCGAGCGATTGATCGTTACGTTCCCGACCATCCTTTTCTTCTTCGCTGCGCCTGTTTGGTTTACCCATCCAAACTAACACACCAACCCACCGTTTTTATTAACGGAACCAAACGCAACGCAACTCTACGCTTTAGGAGACAGTTTGCTAAGGATGGACTTGGAAGTTGGTCAGCAATTTACCACAGGCATCGCTTCCTCTTATCTGCGCTTGTGCTGCTTACCATCCTCTGTACTGTTTATCTTTACTTCGCTATCACTTTAGGGTCCACTGGCTCCTGTTCTGGGTTGGTTGGAGCACAGAAAGCTTCATGCCATTTGGAGCTTGTCAAGGATTCCATTTCCAAGGGCAAACTGAAATTTCGTTGA 1335 0.3723 MFHSLKNKLQCKPNPKEVHDPKKIRHQKGLLDHSNIIQGSKRYLTNSSSFYEESEGSIDISDPIINEILYDSSSLSQCNSGIKDWEGDSDDGPSILMCYKCGEKLKNLNAVETHHITQHSVTEFEEDSSRHIVKTICESGQSLVCSELWQIDCILKVHNIPKTLECFEEYREMVKIKANKLHNKNHNPRCLVDGNELLMFHGTNIACSLGINNSYSLCNLDYCGVCQILRHGFLTNKEFQGALGVYTTSTSGKAFDSIVLCDERAFIRKSVIVCRVIAGRVHCPFEEIQEKVDSRFDSLAEKLTVIYYITRRYKVKNCWTANERAIDRYVPDHPFLLRCACLVYPSKLTHQPTVFINGTKRNATLRFRRQFAKDGLGSWSAIYHRHRFLLSALVLLTILCTVYLYFAITLGSTGSCSGLVGAQKASCHLELVKDSISKGKLKFR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00332 444 Gene3D - 111 316 - -
Trre3g00332 444 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g00332 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 312 - -
Trre3g00332 444 SUPERFAMILY ADP-ribosylation 127 323 - -
Trre3g00332 444 ProSitePatterns Zinc finger C2H2 type domain signature. 98 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00332 Trre-Chr3 2181571 2187150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00332 1 323 C2H2 Transcription Factor Family AT4G27240 35.427 2.54e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00332 - - mtr:11419803 348.206