Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00301 ATGTTTACCGGAGTATTTCTCCGTCACGGCTCACCACCGTCCATTTTTCTCACTACTCTGTTTTTCCTCTGTTTCATTACTCACTCACACTCAAATGAGCTTCAATATCTTATGGACTTCAAATCCTCAATCCAAACTTCTGATCCAAACATTTTCACTTCATGGCACCTATCAAATTCACCCTGCAACTTCACCGGAATTCTCTGCAATTCCGAAGGTTCCGTTACACAAATCAACCTTGCACAGAAAAATCTTGTAGGCACACTTCCTTTTGATTCAATATGCAACCTTCAATCACTTGAGAAAATCTCTATGGAATCAAATTTTTTGCATGGAAGCATCACTAATGATTTGAAAAATTGCACAAACTTGAAGTACTTGGATTTAGGTGGAAATTCATTCAATGGAACATTTCCTGAATTTTCATCTTTGAATAAGTTAGAGTACTTGAATCTCAATAATAGTGGGATTTCTGGTAAATTTCCATGGAAATCATTGGAAAATCTAACAACTCTCACTTTCTTAAGCCTTGGTGATAATCTTTTTGAAGAAAGTTCTTTCCCTTTAGAGATTCTAAAGCTTGAAAAATTGTATTGGCTTTATCTAACCAATATCAGCATCTATGGAAAAATTCCATTTGGTATTGGAAATCTCATTCAGCTTCAACATCTTGAGCTTTCTCATAACAATTTATCTGGTGAAATTCCACATGATATTGGAAAGCTTAAGAATCTAAGAGAGCTTGAGATATATGAGAACAATTTGAGTGGAAAAATTCCATTTGGATTTCGAAACCTTACGAATCTTGTTCTATTTGATGCTTCGGTTAATTACCTTGAAGGTGATTTTTCTGAGCTTAAGTCATTGAAAAATCTTCAATCTCTTCAGCTTTTTGAAAACAAGTTCTCAGGAGAGATTCCACAAGAGTTTGGAGATTTTAAGAATCTCAGAGAACTTTCTCTTTATGATAACAAGCTCACTGGTTTTCTTCCTCAGAAACTTGGTTCTTGGGTTGGAATGTCATACATAGATGTTTCAGATAATTCACTTTCTGGTCCTATACCACCTGATATGTGCAAGAATAACCGAATCGATGATATAGCTTTGTTGAATAACAGTTTCACAGGAAGTATACCAGAAAACTATGCAAATTGCACTTCTTTGGTTCGGTTTCGAGTAAACAAGAATTCACTTTCTGGTGTTGTTCCTAAAGGTATATGGGGTCTTCCAAAGTTGGAAATTTTTGATATTGCTAGGAACAAATTTGAAGGTTCTATTTCATCTGATATTGGAAAAGCTAAATCTCTAGCTCAACTTTTTTTATCTGATAATCAGTTCTCAGGTGAGTTACCATTGGAAATTTCAGAAGCTTCTTCTTTGGTTTCAATTCAGTTAAGTTCGAATCGTATTTCTGGTAGCATACCGGAAAATATAGGCAAATTGAAGAAACTAACTAGTCTTAGTTTGAATAAGAACAATCTTTCTGGTGTTATACCAGATTCTATTGGTTCTTGTGTTTCTCTTACTGATGTAAACCTTGCTGAAAATTCCATTTCTGGTGTAATTCCAACTAGTATCGGTTCTTTGCGTGCGCTTAATTCATTGAATTTGTCTTCAAATATCCTTTCTGGTGAGATTCCATTAAGTTTATCATCTCGAACATTTAGCCTTCTTGATTTATCAAACAATAAGTTGTTTGGTTCCATACCAGATTCACTTGCTATTTCAGCTTTCAAAGATGGTTTCATGGGAAATCCTAGACTATGCAGCCAAATTTTGAAGGATTTTCAACCATGTTCATTTGAATCTGGCAGCTCGAAGAGACTTCGAAACTTCGTGTTCTTTTTCATTGCTGGTTTAATGGTTCTGGTTGTTTCATCAGCATATTTCCTCTTCATGAGACTTAAACAGAAGAACAAGTTCGAGAAGCAAGTACTCAAGACTAATTCATGGAATTTCAAGAAATATCATGTGCTAAACATCAATGAGAATGAAATTATTGACGGAATCAAAGCTGAGAATGTGATTGGAAAAGGAGGGTCAGGGAATGTTTACAAAGTTGAACTCAAAAGTGGTGAAGTTTTTGCTGTCAAACACATTTGGACTTCAAATTCAAGAAGTGATTACAGAAGCAGTTCAGCAATGTTAAAAAGAAGTTCAAATTCATCCGAGTATGATGCCGAGGTGGCAACTTTGAGTTCTATAAGACATGTGAATGTGGTGAAACTCTATTGCAGTATCACAAGTGAAGATAGTAGTTTGCTTGTTTATGAGTTTTTACCAAATGGAAGTTTGTGGGAAAGGTTGCATAATTGTAAGAAGACTCAGATGGGTTGGGATGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTATTTGCATCATTGTTGTGATAGACCTGTTATGCATAGGGATGTTAAATCAAGTAACATATTGCTTGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGACTTGCAAAGATTGTGCAAGGTGGAGCTGGTAATTTGACTCATGTCATTGCTGGAACGCTCGGCTACATGGCTCCCGAATATGCCTACACTAGTAACGTGACGGAGAAGAGCGATGTTTACAGCTTTGGCGTAGTACTAATGGAGTTGGTAACAGGGAAGAAGCCTGTGGAGCCAGAGTTTGGAGAGAATAAGGATATTGTCAGTTGGGTATGCAGCAACTTTAGGAGCAAAGAAAGTGTACTTGAATTGGTGGATTCTACCATTGCAAAGCATTTCAAAGAAGATGCCATTAAGGTGTTGAGAATCGCGATATTGTGCACTGCGAAAGTTCCATATTCAAGACCATCAATGAGAAAGTTGGTCCAAATGTTAGAAGAGGCAGAGCCATCAGCCATGTTCTCCAACAAAGTGATTGTCACCATAGATGGTTAA 2916 0.3666 MFTGVFLRHGSPPSIFLTTLFFLCFITHSHSNELQYLMDFKSSIQTSDPNIFTSWHLSNSPCNFTGILCNSEGSVTQINLAQKNLVGTLPFDSICNLQSLEKISMESNFLHGSITNDLKNCTNLKYLDLGGNSFNGTFPEFSSLNKLEYLNLNNSGISGKFPWKSLENLTTLTFLSLGDNLFEESSFPLEILKLEKLYWLYLTNISIYGKIPFGIGNLIQLQHLELSHNNLSGEIPHDIGKLKNLRELEIYENNLSGKIPFGFRNLTNLVLFDASVNYLEGDFSELKSLKNLQSLQLFENKFSGEIPQEFGDFKNLRELSLYDNKLTGFLPQKLGSWVGMSYIDVSDNSLSGPIPPDMCKNNRIDDIALLNNSFTGSIPENYANCTSLVRFRVNKNSLSGVVPKGIWGLPKLEIFDIARNKFEGSISSDIGKAKSLAQLFLSDNQFSGELPLEISEASSLVSIQLSSNRISGSIPENIGKLKKLTSLSLNKNNLSGVIPDSIGSCVSLTDVNLAENSISGVIPTSIGSLRALNSLNLSSNILSGEIPLSLSSRTFSLLDLSNNKLFGSIPDSLAISAFKDGFMGNPRLCSQILKDFQPCSFESGSSKRLRNFVFFFIAGLMVLVVSSAYFLFMRLKQKNKFEKQVLKTNSWNFKKYHVLNINENEIIDGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNSRSDYRSSSAMLKRSSNSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHNCKKTQMGWDVRYDIALGAARGLEYLHHCCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNLTHVIAGTLGYMAPEYAYTSNVTEKSDVYSFGVVLMELVTGKKPVEPEFGENKDIVSWVCSNFRSKESVLELVDSTIAKHFKEDAIKVLRIAILCTAKVPYSRPSMRKLVQMLEEAEPSAMFSNKVIVTIDG 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00301 971 SMART serkin_6 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00301 971 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Trre3g00301 971 FunFam Leucine-rich receptor-like protein kinase family protein 190 285 - -
Trre3g00301 971 SMART LRR_typ_2 481 505 IPR003591 -
Trre3g00301 971 SMART LRR_typ_2 409 433 IPR003591 -
Trre3g00301 971 SMART LRR_typ_2 313 337 IPR003591 -
Trre3g00301 971 SMART LRR_typ_2 289 312 IPR003591 -
Trre3g00301 971 SMART LRR_typ_2 218 242 IPR003591 -
Trre3g00301 971 SUPERFAMILY L domain-like 369 573 - -
Trre3g00301 971 Gene3D Phosphorylase Kinase; domain 1 651 759 - -
Trre3g00301 971 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Trre3g00301 971 SUPERFAMILY Protein kinase-like (PK-like) 661 953 IPR011009 -
Trre3g00301 971 Pfam Protein kinase domain 673 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00301 971 SUPERFAMILY L domain-like 192 424 - -
Trre3g00301 971 Pfam Leucine rich repeat 483 540 IPR001611 GO:0005515
Trre3g00301 971 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 601 - -
Trre3g00301 971 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Trre3g00301 971 ProSiteProfiles Protein kinase domain profile. 670 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00301 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 952 - -
Trre3g00301 971 CDD STKc_IRAK 676 954 - -
Trre3g00301 971 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Trre3g00301 971 FunFam Receptor-like protein kinase HAIKU2 653 759 - -
Trre3g00301 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Trre3g00301 971 Gene3D Ribonuclease Inhibitor 360 606 IPR032675 -
Trre3g00301 971 SUPERFAMILY L domain-like 55 256 - -
Trre3g00301 971 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 760 968 - -
Trre3g00301 971 Gene3D Ribonuclease Inhibitor 188 359 IPR032675 -
Trre3g00301 971 FunFam Probable inactive receptor kinase RLK902 30 189 - -
Trre3g00301 971 Gene3D Transferase(Phosphotransferase) domain 1 760 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00301 Trre-Chr3 1988879 1992342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00301 16 961 Receptor kinase-like Gene Family AT1G09970 58.447 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g00301 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00301 - - lja:Lj4g3v1120510.2 1379.39