Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00297 ATGAGTTCTCACATGGAGATTTCATCAATTAGAGGGTTACCTGAACTGGGACTAATAGAGGATCCTAACTTTCTCCATCACTGGAATAATCACCTAAATTCAATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATTTTTTGTCAAGTAATCCAAATTTCAACACCAAAACATGCATGGAAACTTCACCTACCGGAAGCGAAAGACCAATGAAACAGCTTAAAAATAACAGCTGGAATTACAATAATAGTCCTCAAACATCAGAAACACAATATGCTAATTCTTGCTCTAATAATCTTCTTTCATTTGCTGATTCGAATTACGAAAATCAATTGGGACTATTGAAGCCTAAGTCTGAGATGGTTTGTCCTAAAATCGATAACAACAGTACTCTTGCAAACATGTTTGGGAATCAAAATCATGTCTTCAAAGCTTTTCAAGAGACGAAAGATATTGAGACGCGTCCTAATAAACTTTCTCAAGCTCATGATCACATAGTAGCTGAAAGGAAGCGCCGCGAGAAGCTAAGCCAGCGATTCATTGCTCTATCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAGCAAATGGAAGAGAAAGTGAATGTTCTTGAGGAGGAAAAGAAAAGGAAGAAAAGTGTGGAATCTGTTGTAATAGTAAAGAAATCTCAACTTTCTTATAATGATGTTGAAGACTCTTCTTCTGATAATACTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTACTCATAAGACTACATTGTCTTAAGAGTCAAGGAGTTATTGAGAAAACAATAAGTGAAATTGAGAAACTTCATCTAAAAGTTATCAATAGCAGTTCCTTAACTTTTGGGAATTTCACCCTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACACTGAAGGATCTTGTGAGAAAGCTACGCTCAGCATATTCATCTTTCATGTGA 1038 0.3574 MSSHMEISSIRGLPELGLIEDPNFLHHWNNHLNSIDTNNLTASAFGDALQKHFLSSNPNFNTKTCMETSPTGSERPMKQLKNNSWNYNNSPQTSETQYANSCSNNLLSFADSNYENQLGLLKPKSEMVCPKIDNNSTLANMFGNQNHVFKAFQETKDIETRPNKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVNVLEEEKKRKKSVESVVIVKKSQLSYNDVEDSSSDNTTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKTISEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVGFCMTLKDLVRKLRSAYSSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00297 345 CDD bHLH_AtNAI1_like 166 241 - -
Trre3g00297 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 229 IPR036638 GO:0046983
Trre3g00297 345 Coils Coil 205 232 - -
Trre3g00297 345 PANTHER BHLH TRANSCRIPTION FACTOR 43 342 - -
Trre3g00297 345 SMART finulus 172 221 IPR011598 GO:0046983
Trre3g00297 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Trre3g00297 345 Gene3D - 164 238 IPR036638 GO:0046983
Trre3g00297 345 Pfam Helix-loop-helix DNA-binding domain 171 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00297 Trre-Chr3 1968128 1970155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00297 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 9.16e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g00297 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00297 - - gmx:100798018 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00297 3 1968128 1970155 Trre3g00297 3 1968128 1970155 ECH
Trre7g03864 7 46931417 46932880 Trre3g00297 3 1968128 1970155 PCT