Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00288 ATGGAATCATCATGGTTCATCGCACTTGTGTCTCTATGCATCATCTTCCTCATCAGAGCCATCTTCTCCACCAAAACAACCGCCACAACCCTCCCTCCCGGTCCACCATACATACCAATCATCACAACCATCCTATGGCTCCGTAAACCATTCTCCCAACTCGAACCTTTTCTCAAAACCCTCCTTCCCAAATACGGTCCAATCATCACTCTCAGAATTGGTTCTCGTCCTTCAATTTTCATCGCCGACCGTTCCATCGCTCACCAAGCTCTTATTCAAAACTCCTCTGTTTTCTCCAACCGCCCCAAAGCTCTTCCCACTCACAAAATCAATACCAGCAACCAACATAACATCAGTTCTGCTTCATACGGTCCTACATGGCGTATCCTCCGTCGTAACCTCACTTCAGAGATGCTTCATCCTTCCAAATTTAAATCTTTCTCGGAAAATCGAAACTGGGTTCTACACATTCTCATCAACCGTCTTAAATCCGCTTCAGAATCGGAATCTGCAGATTCTATTACCGTTGTTTCTCACTTTAATTATGCAATGTTCTGTTTACTGGTTTTCATGTGTTTTGGTGAAAGAGTTAAGCATAAGTTAATCTGTGACATCTTTCGTGCACAACGGAATCATTTGTTGGGTATTAAAAAATTCAATATTTTGAATTTTTGGCCTAGAGTTACGAGGATTTTGTTGTGTAAACGATGGGAGGAGTTTTTGAAATTTCATAAGGATCAAGAGGATATTTTGCTTCCGTTGATAAGAGCGAGGAAGCAAGTTAAGGAGAGTGGATTGAACAATGGTAACAATGTTGTTTCGTATGTGGATACTCTTTTGGAGTTGCAGTTGCCTGAGGAGAAACGTAAGCTGAATGAAGATGAAATCGTCACTCTTTGTTTAGAGTTTTTGACAGCTGGGACGGATACTACTTCCACTGCTTTGCAGTGGATTATGGCGAATTTGGTGAAGTACCCGGATGTGCAGAGGAGGATTGTGGAGGAGATTAGGGATGTGATGGGCGGGGATGATGATGGAGACAAGAAGGAAGTGAAAGAGGAAGACTTGCATAAGTTTCCATATCTGAAGTGTGTGATTTTAGAAGGGTTGAGGCGTCATCCACCGGCTCATTTTGTGTTGCCACACGCGGTGACTGAGGATGTTGTTTTGAATGGTTATTTAGTGCCCAAAAACGGGACAGTGAATTTTATTGTGGCTGAGATGGGACGGGATCCTCGTGTTTGGGAGGATCCAATGGAGTTTAAGCCAGAACGGTTTTTAAAGAATGAAACATTTGATATCACAGGGAGTAAAGAGATAAAGATGATGCCGTTTGGAGTTGGGAGGAGAATTTGTCCGGGATATAATTTAGCTTTGCTTCATTTGGAATATTTTGTCGCTAATTTGGTTTGGAATTTTGATTGGAAGGTTCCAGAGGGTGGACACGTCGATTTGTCGGAAAAACAAGAATTCACCATGGTCATGAAAAATCCATTGCGGGTTCATATTTCTCCTAGGATCTAG 1524 0.4232 MESSWFIALVSLCIIFLIRAIFSTKTTATTLPPGPPYIPIITTILWLRKPFSQLEPFLKTLLPKYGPIITLRIGSRPSIFIADRSIAHQALIQNSSVFSNRPKALPTHKINTSNQHNISSASYGPTWRILRRNLTSEMLHPSKFKSFSENRNWVLHILINRLKSASESESADSITVVSHFNYAMFCLLVFMCFGERVKHKLICDIFRAQRNHLLGIKKFNILNFWPRVTRILLCKRWEEFLKFHKDQEDILLPLIRARKQVKESGLNNGNNVVSYVDTLLELQLPEEKRKLNEDEIVTLCLEFLTAGTDTTSTALQWIMANLVKYPDVQRRIVEEIRDVMGGDDDGDKKEVKEEDLHKFPYLKCVILEGLRRHPPAHFVLPHAVTEDVVLNGYLVPKNGTVNFIVAEMGRDPRVWEDPMEFKPERFLKNETFDITGSKEIKMMPFGVGRRICPGYNLALLHLEYFVANLVWNFDWKVPEGGHVDLSEKQEFTMVMKNPLRVHISPRI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00288 507 Pfam Cytochrome P450 32 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 CDD CYP77_89 64 500 - -
Trre3g00288 507 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre3g00288 507 FunFam Cytochrome P450 family protein 25 507 - -
Trre3g00288 507 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 Gene3D Cytochrome P450 24 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g00288 507 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 9 499 - -
Trre3g00288 507 SUPERFAMILY Cytochrome P450 32 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00288 Trre-Chr3 1927139 1928662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00288 3 506 Cytochrome P450 AT1G64940 56.445 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00288 K24184 - gmx:100795683 709.523