Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00284 ATGGAAAATTATTCATATCAATCATACCCAGATTCAGGTAACTCATCACCACGTTCTAGAGAAATTGACTTCGAAAACCCACCCACTGGAACAACAACACCATGGGAAGATCAACAACAACAACAAAACCAAACAAGTTACAAAGCAAAATTCATGTGCAGCTACGGTGGCAAAATCCAACCAAGACCACACGATAATCAACTCTCTTACGTTGGTGGTGAAACTAAAATCCTAGCCGTTGATCGTAACATTAAGTTTCCTTTAATGATCTCAAAGCTCTGTTCTCTCATCGAAGCACCTGATGTTTCCTTTAAATACCAACTCCCTGGCGAAGATCTCGATGCACTTATCTCAGTAACAAACGACGATGATCTTGATCATATGATGCATGAATATGATCGTCTCTACCGTGCTTCCGCTAGACCCGCTCGTATGCGATTATTCCTTTTTGTTAACGATTCTGATTCTGTTTCAAATCCACCCGACCCGGTTAAACCGAGTAACGTTGATTATTTATTCGGAATTGAAAAGCCTGTAACCGTTGTTGCTCCGCCTCCTTCCGCCGTTAAATTTCACGATCCTGTTCCAGAACCGGTTGCTCCGTTACCTCAGTATCATAGTCAAGTTCGACCCGGTTTGAATCCTGATCGGGTTGTAGGTTCGGATCCGGGTTTGACCTATCCGATTGAGATTCAGAGGCAGTTACAACGGATGCAGATTGCAGAGAACGAGCAAACTGGTTATCGGAGGAAAAGTGAAGATTATCCTGCCGGAGATTATTACGTTCACAAAGTACCGGAGAAATTTCCGGCGATGTCGAATTTCGCACCACCACCGCAACAACAACAACAGCAGCAGCATCAGCATCAACCTGGTTATTGGCAAGAAAAGCCTGTTTCCGGTGATACTTATCCACCGGGAGTGTCAGGAGGAGGTGATCCGGCAGTTTATATGGTTCCGGCACCGGGAACTTACTATCACGCGCCGGTGATGCGTCCACCGGCAACTCAAGGTTATTACACGGTGCAACGAATGCCATCTGATGCTTACCGCGAAGCGCAGGTTTACGGCAGTGCTCCGCCGTCTAAAGCGCCGTTTTCATCGGGAGTTTCGGCGACTTATGCACCGGCGCAGCCGGTTAAAGGTCCTGTTTATGGTGAAGGAGTTAGTGTGGTTCGGTCGAGTGGGATACCGGATAAAACGGTTGGTTCGTACGCACAGGTGGCGGCGTATGATAGTGCGAGTGGCAGACAAGTTTATTATAATGCGCCGGGTGGTGTAGTACACGCTCCGCCATACCAAGGAGTTGCTGCACCTGTTACTACAGACGTTAAAGTAATGAGCAAGATTTCTCAAGGTTCAGTGTGA 1368 0.4693 MENYSYQSYPDSGNSSPRSREIDFENPPTGTTTPWEDQQQQQNQTSYKAKFMCSYGGKIQPRPHDNQLSYVGGETKILAVDRNIKFPLMISKLCSLIEAPDVSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFVNDSDSVSNPPDPVKPSNVDYLFGIEKPVTVVAPPPSAVKFHDPVPEPVAPLPQYHSQVRPGLNPDRVVGSDPGLTYPIEIQRQLQRMQIAENEQTGYRRKSEDYPAGDYYVHKVPEKFPAMSNFAPPPQQQQQQQHQHQPGYWQEKPVSGDTYPPGVSGGGDPAVYMVPAPGTYYHAPVMRPPATQGYYTVQRMPSDAYREAQVYGSAPPSKAPFSSGVSATYAPAQPVKGPVYGEGVSVVRSSGIPDKTVGSYAQVAAYDSASGRQVYYNAPGGVVHAPPYQGVAAPVTTDVKVMSKISQGSV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00284 455 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 68 152 - -
Trre3g00284 455 MobiDBLite consensus disorder prediction 275 293 - -
Trre3g00284 455 MobiDBLite consensus disorder prediction 271 310 - -
Trre3g00284 455 CDD PB1_UP2 52 150 - -
Trre3g00284 455 MobiDBLite consensus disorder prediction 1 43 - -
Trre3g00284 455 Gene3D - 69 153 - -
Trre3g00284 455 SMART PB1_new 63 152 IPR000270 GO:0005515
Trre3g00284 455 PANTHER OS05G0427100 PROTEIN-RELATED 9 336 - -
Trre3g00284 455 SUPERFAMILY CAD & PB1 domains 64 160 - -
Trre3g00284 455 Pfam PB1 domain 64 151 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00284 Trre-Chr3 1899519 1900886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00284 43 150 MAP Kinase Kinase Kinase AT5G57610 49.074 6.07e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00284 - - gmx:100780332 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00284 3 1899519 1900886 Trre3g00284 3 1899519 1900886 ECH
Trre7g03893 7 47143111 47144496 Trre3g00284 3 1899519 1900886 PCT