Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00272 ATGAAATCTGTTATTGATCGCTATAACAAACAAAAAGAGGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGCAAGAAAGCCATAGCAGGCAATTGATGGGTGAAGGACTTGCTGGTTTGGGTATTAAAGAACTACAAAATCTGGAAAACCAGCTGGAGATTAGTCTAAAGGGTGTTCGGATGAAAAAGGATCATATTTTGACTAATGAGATTAAAGAACTACACCAAAAGGGAAATCTTGTTCATCAAGAAAATGTACAACTCCATAAGAAGATGGACCTTGTCCAGAAAGAAAATGCAGAGCTACTGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGCAACAACCAATCTTTCATGCACTATCAGAAACGGATTTGATTTACATGCACCTATCAGTCTCCAGCTAAGCCAGCCACAGCCTCAATACAGTGAACCAGCAGCCAAAGCCATGAAATTAGGGTATTCCCTTAAACTGATGATGTACAACATATAG 558 0.3925 MKSVIDRYNKQKEEQHQLMNPASEVKFWQTEAASLRQQLQYLQESHSRQLMGEGLAGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGNLVHQENVQLHKKMDLVQKENAELLKKVYEARSTNEENATTNLSCTIRNGFDLHAPISLQLSQPQPQYSEPAAKAMKLGYSLKLMMYNI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00272 185 Coils Coil 103 123 - -
Trre3g00272 185 Pfam K-box region 23 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre3g00272 185 Coils Coil 25 45 - -
Trre3g00272 185 Coils Coil 60 80 - -
Trre3g00272 185 ProSiteProfiles K-box domain profile. 25 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00272 Trre-Chr3 1822764 1828358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00272 1 176 MADS-box Gene Family AT3G57230 50.556 1.78e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00272 K09264 - gmx:100808145 279.256