Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00267 ATGGCAACTTCTCATTTTTCAACGCAACCTTATCCCCTGAGGGTTCCGAATCTCATCGGGGGCAAGTTTGTTGAGTCAAAATCATTGACTTTTATAGATGTTATAAACCCTGCAACACAAGAAGTTGTTTCACAAGTTCCTTTGACTACAAATGAAGAATTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATATCCATCATGGCGTAACACTCCAATCACGAAACGTCAACGTGTTATGTTGAAGTTCCAGGAGCTTATTCGCAGAGATATGGATAAACTTGCCCTGAATGTGACAACAGAACAAGGAAAGACGTTGAAGGATGCGCAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGCGGGATGGCAACACTACAGATGGGAGAGTATGTTTCCAATGTATCACATGGAATTGATACTTTCAGCATTAGAGAACCACTCGGTGTTTGTGCCGGTATCTGTCCTTTTAACTTTCCCGCAATGATTCCCCTGTGGATGTTCCCAGTGGCAGTAACCTGTGGCAATACTTTTATCCTAAAACCGTCAGAGAAAGATCCAGGTGCTTCTATGCTTCTTGCACAATTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAGCCCATGATACTGTGAATGCTATTTGTGATCATGATGACATCAAAGCTATATCTTTTGTTGGTTCAAATGTTGCGGGAATGCACATATATGCAAGAGCAACAGCTAAAGGGAAGCGTGTTCAGTCTAATATGGGGGCTAAAAATCACGCGGTTGTCATGCCGGATGCAAGTGTTGATGCAACTATAAATTCTTTAATTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTAAGCACTGTTGTTTTTGTTGGAGGCTCAAAACCATGGCAAAGTATACTTGTGGAGCGTGCCAAAGCTCTTAAAGTAAACGCTGGAACTGAACCTGATGCAGACCTTGGACCAGTCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCAAGACTATTGCTTGATGGAAGAAGTATAGTGGTCCCTGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTAGCAGATGTGCATTCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTGTCAATGGAAACAAGTATGGAAATGGTGCTACTATATTCACTAGATCTGGTGTTGCTGCAAGGAAATTTCAGACCGAAATTGAGGCAGGGCAGGTGGGCATCAATGTTCCTATTCCCGTTCCTTTGCCCTTTTTCTCCTTTACTGGCAACAAGGCATCATTTGCAGGCGATCTTAATTTCTATGGCAAAGCAGGGGTTAACTTTTATTCACAAATCAAAACAGTAACTCAGAATTGGAAGGATTCAGATAGTGAGGACAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTAA 1533 0.4292 MATSHFSTQPYPLRVPNLIGGKFVESKSLTFIDVINPATQEVVSQVPLTTNEEFKAAVAAAKKAYPSWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLNIVHGAHDTVNAICDHDDIKAISFVGSNVAGMHIYARATAKGKRVQSNMGAKNHAVVMPDASVDATINSLIAAGFGAAGQRCMALSTVVFVGGSKPWQSILVERAKALKVNAGTEPDADLGPVISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVHSDMECYKEEIFGPVLLLMEADSLEEAINIVNGNKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYSQIKTVTQNWKDSDSEDKINMAMPTSQKS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00267 510 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 260 460 - -
Trre3g00267 510 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 7 507 IPR010061 GO:0004491
Trre3g00267 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 19 468 IPR016162 GO:0016491
Trre3g00267 510 SUPERFAMILY ALDH-like 7 493 IPR016161 GO:0016491
Trre3g00267 510 Pfam Aldehyde dehydrogenase family 23 487 IPR015590 GO:0016491
Trre3g00267 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Trre3g00267 510 CDD ALDH_F6_MMSDH 15 491 IPR010061 GO:0004491
Trre3g00267 510 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 19 266 - -
Trre3g00267 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 460 IPR016163 GO:0016620
Trre3g00267 510 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 17 491 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00267 Trre-Chr3 1777617 1782642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00267 7 475 Aldehyde Dehydrogenase Gene Family AT2G14170 82.340 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00267 K00140 - gmx:100783569 895.96