Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00261 ATGGTTGTGCACGCAAAGCAGCTGCTGCTGATGGTTGTTGTGACGATTTTTTTTGCAAGAGCAGGAACTCAGAAGCTACTATCTCTGCCAAACTGTCCAACAAAGTGTGGCTCTGTCACCATTCCCTTCCCATTTGGAACCACCAAGGATTGTTCCTTGGACAACACCTTTCTCATAAATTGCAACAAAACATCTTCAACCTCAAGACACGTACCTTTCTTGCCGCAGAGTAATCAAAGTGTCCTAAACATCTCACTCGATGGTGAACTGCGAGTTGCATGGCCAGTAGCAAGTGATTGTTATGCTGAAAAGGGTGAACAAGTGAACCAGACATATTGGGATATTAACATGACAAATTTTTCTGTCTCGTCAACTCGAAACAAATTCATCGCAGTTGGCTGTGACACACTTGCATTACTAGCAACATATGATTCTGGGGGGAAAAACTACAGCACAGGATGTATGGCTTTGTGCAATAGGCTAAATGATATTGCGGCCAATCAATCTTGCTCCGGCACTGGTTGTTGCAAGGTTTCAATACCCCAAGGTCACGTGCTCACAAAAGTAACCTATGTTACTCTAGGTGTATTCAACAATCACTCAGCAGTGCATGACTTCAATCCATGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAGTTTCACATCCACGGACCTCCTCAAGTTGGAGAAGGAGGAGTTTCCGGTATTGTTGGATTGGGCAGTAGGGAACCAAACGTGCCAGCAAGCTCAAAAGGATCTTTCAAATTATGCCTGTAAGGACAACAAAAGTACATGTTACGATGCAACAGAGAGATCTGGTTACCTTTGCAGATGCTTCAATGGATATTCGGGAAATCCTTACCTCGTTCATGGTTGCCAAGATGTTAATGAATGCATGGAGTCTGTTAGAAAGTCCAATGACTGTGTTGAGGGGGCAACATGCATCAATTTTCCAGGAAGCTACCAGTGTTTATGTCCGGTTGGATACGAGGGAAATGGGAAGATGAATGGAACAAGATGCAGCCCAAACTCCAGTACCAAATCAAGGAAAGAGATCATACTGATTATTGCATTGAGTATCAGCATAAGCCTCGTAACACTACTTGTCGGAAGCTTTTATGCATATTTGGCAATGAAGAAAAGAAAGCTCATAAAACTTAAAGAACAATTCTTTCAACAAAACGGCGGCTTACTGTTACAACAACAACTAGTGAGACATGGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAATTTTGATGAAGGCAAAATCCTAGGCCAAGGTGGTCAAGGAACTGTTTACAAAGGAGTTTTACGAGATAAAAGAATTGTAGCAATAAAGAAATCCAAAATCAGTGACCCTAAACAGATTGAGCCGTTCATCAATGAACTGATCGTGCTTTCCCAAATCAACCATAGAAATGTAGTAAATCTTTTAGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCCAATGGAACTGTTCATGAGCATCTTCATGATCAAAATCAATCTTTAAAGCTCACATGGAAAACAAGATTGAGAATAGCAAAACAAACTGCTGGAGTCTTGGCATACTTGCATTCTGCTGCATCGACACCAATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAACCTCACCGCAAAGGTTTCTGATTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGTCAGATAAAAACCCTAGTGCAGGGTACATGGGGGTACCTTGACCCAGAGTATTTCCATACAAGCAAATTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTACTAGCAGAGCTACTGACAGGAAAGAAAGCACTATCTTTTAGCCGGCCAGAGCTAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCGATGAAAGAGGGTCGATTACATCATATTTTGGACAAAAATATAGATGAGGCGAATATTGAGCAACTAATGGAAGTTGCCCATATTGCAGAAAGATGTTTAAGGGTGAAGGGTGAGAAAAGACCCACCATGAAAGAAGTAGCAATGGAATTAGAGGCAATATTAGTTTTTGAAGAGCATCCTTGGGGAAGTGGCAATTTGTCTTCAGAAGAGACTGATAACTTGTTCAGAGCAGCAACATCGGTTATCAGTGTTGAAAATGGTGGTGGCATTAATTCATCAAACTCTTATAGAATAAACCTTGCATAG 2253 0.4101 MVVHAKQLLLMVVVTIFFARAGTQKLLSLPNCPTKCGSVTIPFPFGTTKDCSLDNTFLINCNKTSSTSRHVPFLPQSNQSVLNISLDGELRVAWPVASDCYAEKGEQVNQTYWDINMTNFSVSSTRNKFIAVGCDTLALLATYDSGGKNYSTGCMALCNRLNDIAANQSCSGTGCCKVSIPQGHVLTKVTYVTLGVFNNHSAVHDFNPCGYAFLVENGAYSFTSTDLLKLEKEEFPVLLDWAVGNQTCQQAQKDLSNYACKDNKSTCYDATERSGYLCRCFNGYSGNPYLVHGCQDVNECMESVRKSNDCVEGATCINFPGSYQCLCPVGYEGNGKMNGTRCSPNSSTKSRKEIILIIALSISISLVTLLVGSFYAYLAMKKRKLIKLKEQFFQQNGGLLLQQQLVRHGGSTETAKVFTVEELNEATNNFDEGKILGQGGQGTVYKGVLRDKRIVAIKKSKISDPKQIEPFINELIVLSQINHRNVVNLLGCCLETEVPLLVYEFISNGTVHEHLHDQNQSLKLTWKTRLRIAKQTAGVLAYLHSAASTPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQIKTLVQGTWGYLDPEYFHTSKLTEKSDVYSFGVVLAELLTGKKALSFSRPELDRNLAVYFVSSMKEGRLHHILDKNIDEANIEQLMEVAHIAERCLRVKGEKRPTMKEVAMELEAILVFEEHPWGSGNLSSEETDNLFRAATSVISVENGGGINSSNSYRINLA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00261 750 ProSiteProfiles EGF-like domain profile. 296 343 IPR000742 -
Trre3g00261 750 CDD EGF_CA 296 333 - -
Trre3g00261 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 702 IPR045274 GO:0007166
Trre3g00261 750 SUPERFAMILY EGF/Laminin 295 335 - -
Trre3g00261 750 FunFam Wall-associated receptor kinase 2 506 722 - -
Trre3g00261 750 Pfam Protein tyrosine and serine/threonine kinase 433 699 IPR001245 GO:0004672|GO:0006468
Trre3g00261 750 Gene3D Phosphorylase Kinase; domain 1 403 505 - -
Trre3g00261 750 Pfam Wall-associated receptor kinase galacturonan-binding 32 92 IPR025287 GO:0030247
Trre3g00261 750 Pfam Wall-associated kinase 167 280 IPR013695 GO:0004674|GO:0016020
Trre3g00261 750 Gene3D Transferase(Phosphotransferase) domain 1 506 709 - -
Trre3g00261 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Trre3g00261 750 CDD STKc_IRAK 436 702 - -
Trre3g00261 750 SUPERFAMILY Protein kinase-like (PK-like) 413 699 IPR011009 -
Trre3g00261 750 SMART egf_5 247 295 IPR000742 -
Trre3g00261 750 SMART egf_5 299 343 IPR000742 -
Trre3g00261 750 Gene3D Laminin 245 342 - -
Trre3g00261 750 Pfam Calcium-binding EGF domain 296 342 IPR001881 GO:0005509
Trre3g00261 750 SMART serkin_6 430 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00261 750 FunFam Fibrillin 2 291 338 - -
Trre3g00261 750 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Trre3g00261 750 SMART egfca_6 296 343 IPR001881 GO:0005509
Trre3g00261 750 ProSiteProfiles Protein kinase domain profile. 430 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00261 750 FunFam Wall-associated receptor kinase 2 400 505 - -
Trre3g00261 750 ProSitePatterns Calcium-binding EGF-like domain signature. 296 325 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00261 Trre-Chr3 1727765 1732798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00261 1 710 Receptor kinase-like Gene Family AT1G21230 48.333 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g00261 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00261 - - mtr:25489730 1027.31