Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00260 ATGCCCATGGTTGTGTACTCAAAACAGCTGCTGATGGTGGTTGTTACAGTCTTTTTGGTAAAAGAAGCAACTCAGCAGCTACTATCTCTGCCAAATTGCCCAACAAAGTGTGGCTCTGTCACCATTCCCTTCCCATTTGGAATAACCAAGGATTGTTCCTTGGACAGCACTTTTCTCATTGATTGCAACAAAACATCTGTAACTTCAACCTCAACACATGTACCTTCCTTGCCACAGAGTAATCACAGTGTATTAAACATCTCACTGGACGGTGAACTGCACGTTGCATGGCCAGTAGCCAGTGATTGCTATGCTGAAAAGAGCGAACTTGTGAACCAAACATATTGGGGTATCAACATGACACATTTTCCAATCTCGTCAACTCGAAACAAGTTGATCGCAGTTGGCTGTGACACAGCTGCATTTCTCGCAACATATGATTCTGTGGGAAACAACTACAGCACAGGATGTGTGGCTTTGTGTAACAGGCTTAATGATATAATGGACAATGAATCTTGCACCGGCACCGGTTGCTGCGAGATTTCAATACCCCAAGGTCATGTGTTCAAGAAATTATCCTATGCTTCTGGTGGTCTATTCAACAATCACTCAGCAGTACATGACTTCAATCCGTGTGGTTATGCTTTCTTAGTTGAAAATGGAGCCTACAGCTTTGAATCCACAGACCTTCTCAAGTTGGAGAAGGAGGAGTTTCCAGTGTTGTTGAACTGGGCAGTGGGGAACCTAACATGCCAGCAAGCTCAGAAGGATCTTTCAAATTATGCCTGTAAGGACAACACAAGTACATGTTATGATGCAACCGAGAGACCTGGTTACCTTTGCAGATGCTTTCGTGGATATCGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGAGTCCAATGACTGTGTTGACGAGGCAACCTGCATCAATCTTCCTGGAAGCTACCATTGTTTATGTCCAGCAGAATATGAGGGAAATGGGAAGATGAATGGAACAAGATGCAATCCAAAATCGAACACCAAATCAAGGAAAGAGATCATATTGATCATTGCATTGAGTCTCAGCATAAGCCTTGTCGCACTACTGGTTGGAAGCTTTTATGCTTATTTGGCAATGAAGAAAAGGAAGCTCATTAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGGTTACACTTACAACAACAACTAGTGAGGCATGGAGGGTCAACTGAAACGGCTAGAGTCTTCACTGTTGAGGAGCTAAACAAAGCAACCAACAACTTCGATGAAAGAAAGATCTTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATCAGTGATCCAAACCAAATTGAGCCGTTTATCAATGAAGTGATCGTGCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTCTTGGGTTGTTGTTTAGAAACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCCCAATGGTACTGTTTATGATTATCTTCATGGTCAAAACCAAACTTTAAAGCTTACATGGAAAACAAGACTAAAAATAGCAAAAGAAACTGCAGGAGTCCTAGCGTACTTGCATTATACTGCTACTACACCAATCATACATAGAGATGTGAAATCTACAAATATACTTCTAGATCACAATCTCACCGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTTTTCCTCTTGACCATAGTCAGATAACCACTCTAGTCCATGGAACAATGGGGTATCTTGACCCAGAATATTTCCACACAAGCCACTTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTACTGACGGGAAAGAAGGCACTGTCTTTTAGCAGGCCAGAGAATGATAGAAACCTTGCAGTGTACTTTGTTTCGTCAATGAAAGAGGGTCGGTTGCATTATATTTTGGACAAAAATATAGATGAGACGAATTTTGAGCAACTAAAGGAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTGAATGGTGACGAAAGACCTGCCATGAAAGAAGTGGCAAAGGAACTAGAGGGAATATTAGTTATTGAAGATCACCGTTGGGGAAGTGGCAATTTATCTTCAGAAGAGACTGATAACTTGCTAAGAACAGCGCCTTCGGTTATCAATGTTGAAGACGGCGTTCATGGAAGTGGGACTAATTGTTCTGACTCATATAGCATAAACCAGATGTCGATGTCAACGATTGGTGGAAGATGA 2283 0.4135 MPMVVYSKQLLMVVVTVFLVKEATQQLLSLPNCPTKCGSVTIPFPFGITKDCSLDSTFLIDCNKTSVTSTSTHVPSLPQSNHSVLNISLDGELHVAWPVASDCYAEKSELVNQTYWGINMTHFPISSTRNKLIAVGCDTAAFLATYDSVGNNYSTGCVALCNRLNDIMDNESCTGTGCCEISIPQGHVFKKLSYASGGLFNNHSAVHDFNPCGYAFLVENGAYSFESTDLLKLEKEEFPVLLNWAVGNLTCQQAQKDLSNYACKDNTSTCYDATERPGYLCRCFRGYRGNPYLIHGCQDINECMESNDCVDEATCINLPGSYHCLCPAEYEGNGKMNGTRCNPKSNTKSRKEIILIIALSLSISLVALLVGSFYAYLAMKKRKLIKLKEQFFQQNGGLHLQQQLVRHGGSTETARVFTVEELNKATNNFDERKILGQGGQGTVYKGVLQDKRIVAIKKSKISDPNQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTVYDYLHGQNQTLKLTWKTRLKIAKETAGVLAYLHYTATTPIIHRDVKSTNILLDHNLTAKVSDFGASRIFPLDHSQITTLVHGTMGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGKKALSFSRPENDRNLAVYFVSSMKEGRLHYILDKNIDETNFEQLKEVAHIAERCLRVNGDERPAMKEVAKELEGILVIEDHRWGSGNLSSEETDNLLRTAPSVINVEDGVHGSGTNCSDSYSINQMSMSTIGGR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00260 760 FunFam Fibrillin 2 294 337 - -
Trre3g00260 760 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Trre3g00260 760 ProSiteProfiles Protein kinase domain profile. 429 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00260 760 ProSitePatterns Calcium-binding EGF-like domain signature. 299 324 IPR018097 GO:0005509
Trre3g00260 760 Pfam Calcium-binding EGF domain 299 341 IPR001881 GO:0005509
Trre3g00260 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 702 IPR045274 GO:0007166
Trre3g00260 760 ProSiteProfiles EGF-like domain profile. 299 342 IPR000742 -
Trre3g00260 760 FunFam Wall-associated receptor kinase 2 505 721 - -
Trre3g00260 760 Pfam Wall-associated receptor kinase galacturonan-binding 33 91 IPR025287 GO:0030247
Trre3g00260 760 FunFam Wall-associated receptor kinase 2 399 504 - -
Trre3g00260 760 SMART egf_5 250 298 IPR000742 -
Trre3g00260 760 SMART egf_5 302 342 IPR000742 -
Trre3g00260 760 CDD EGF_CA 299 332 - -
Trre3g00260 760 SMART serkin_6 429 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00260 760 Pfam Protein kinase domain 430 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00260 760 Gene3D Transferase(Phosphotransferase) domain 1 505 711 - -
Trre3g00260 760 SMART egfca_6 299 342 IPR001881 GO:0005509
Trre3g00260 760 SUPERFAMILY Protein kinase-like (PK-like) 412 699 IPR011009 -
Trre3g00260 760 CDD STKc_IRAK 435 701 - -
Trre3g00260 760 SUPERFAMILY EGF/Laminin 298 334 - -
Trre3g00260 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Trre3g00260 760 Gene3D Phosphorylase Kinase; domain 1 396 504 - -
Trre3g00260 760 Gene3D Laminin 250 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00260 Trre-Chr3 1723601 1726759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00260 12 709 Receptor kinase-like Gene Family AT1G21230 46.901 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g00260 Pkinase 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00260 - - mtr:25489730 999.579